Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC2.68□□□□□ -1.98
COL5A1P20908 AC003982.1-202ENST00000469928 248 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AP001025.2-201ENST00000490908 477 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AC108210.2-201ENST00000503681 201 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.68□□□□□ -1.98
COL5A1P20908 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC2.68□□□□□ -1.98
COL5A1P20908 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.68□□□□□ -1.98
COL5A1P20908 AC007954.1-201ENST00000554198 494 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AC122134.1-202ENST00000569111 1201 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.68□□□□□ -1.98
COL5A1P20908 KATNBL1P1-201ENST00000605192 748 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AC106730.3-201ENST00000624568 641 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AL356094.1-201ENST00000624663 1212 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A1P20908 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A1P20908 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC2.68□□□□□ -1.98
COL5A1P20908 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
COL5A1P20908 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
COL5A1P20908 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A1P20908 RN7SKP192-201ENST00000411291 327 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AC069218.2-201ENST00000411665 344 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.68□□□□□ -1.98
COL5A1P20908 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC2.68□□□□□ -1.98
COL5A1P20908 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC2.68□□□□□ -1.98
COL5A1P20908 RPL21P71-201ENST00000465598 459 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AC021205.1-201ENST00000468797 348 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AP004217.1-201ENST00000480579 346 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AC005921.1-201ENST00000510589 286 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC2.68□□□□□ -1.98
COL5A1P20908 AL136520.1-202ENST00000555494 763 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AL845331.3-202ENST00000562856 261 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC2.68□□□□□ -1.98
COL5A1P20908 AC092574.1-201ENST00000609771 420 ntBASIC2.68□□□□□ -1.98
COL5A1P20908 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
COL5A1P20908 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC2.68□□□□□ -1.98
COL5A1P20908 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC2.68□□□□□ -1.98
COL5A1P20908 AC092079.1-201ENST00000558620 1985 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL5A1P20908 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL5A1P20908 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC2.67□□□□□ -1.98
COL5A1P20908 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC2.67□□□□□ -1.98
COL5A1P20908 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
COL5A1P20908 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
COL5A1P20908 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
COL5A1P20908 PNPT1P2-201ENST00000456768 2050 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
COL5A1P20908 RFX3-203ENST00000381984 364 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A1P20908 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL5A1P20908 SNORA40.4-201ENST00000390971 128 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A1P20908 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A1P20908 VN1R48P-201ENST00000448149 1036 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 AL162388.1-201ENST00000450912 352 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A1P20908 AC092045.1-201ENST00000495716 1231 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 RPS29P21-201ENST00000496272 170 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC2.67□□□□□ -1.98
COL5A1P20908 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.67□□□□□ -1.98
COL5A1P20908 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC2.67□□□□□ -1.98
COL5A1P20908 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A1P20908 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.67□□□□□ -1.98
COL5A1P20908 CBX3P5-201ENST00000552017 521 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC2.67□□□□□ -1.98
COL5A1P20908 SNORD53-201ENST00000579969 78 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC2.67□□□□□ -1.98
COL5A1P20908 AC022387.2-201ENST00000604050 448 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 AC144521.1-201ENST00000607148 956 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.67□□□□□ -1.98
COL5A1P20908 AL355493.4-201ENST00000618530 292 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 METTL8-218ENST00000638989 876 ntTSL 5 BASIC2.67□□□□□ -1.98
COL5A1P20908 METTL8-219ENST00000640734 726 ntTSL 2 BASIC2.67□□□□□ -1.98
COL5A1P20908 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
COL5A1P20908 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
COL5A1P20908 MAPK10-362ENST00000641864 4484 ntBASIC2.67□□□□□ -1.98
COL5A1P20908 AC066616.2-201ENST00000559334 1481 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
COL5A1P20908 RN7SKP223-201ENST00000410582 62 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC2.66□□□□□ -1.98
COL5A1P20908 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC2.66□□□□□ -1.98
COL5A1P20908 AIMP1P1-201ENST00000418670 937 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 AL034379.1-201ENST00000423216 253 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 RPL23AP4-201ENST00000427757 463 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 EIF2S2P4-201ENST00000461070 984 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 RN7SKP283-201ENST00000517197 270 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 MIR3186-201ENST00000577404 85 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.66□□□□□ -1.98
COL5A1P20908 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC2.66□□□□□ -1.98
COL5A1P20908 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.66□□□□□ -1.98
COL5A1P20908 AC084824.5-201ENST00000612009 413 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 MIR6817-201ENST00000615588 66 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC2.66□□□□□ -1.98
COL5A1P20908 AC104820.1-201ENST00000624183 307 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 AC119674.1-220ENST00000641502 1048 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL5A1P20908 MTND4P21-201ENST00000453886 1357 ntBASIC2.66□□□□□ -1.98
COL5A1P20908 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL5A1P20908 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL5A1P20908 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
COL5A1P20908 MIR512-1-201ENST00000384913 84 ntBASIC2.65□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms