Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AP000942.1-201ENST00000463969 747 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RN7SL303P-201ENST00000469773 251 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC087312.1-201ENST00000471411 480 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC087385.1-201ENST00000475062 312 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC090686.1-201ENST00000481577 749 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AP001025.2-201ENST00000490908 477 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RN7SL810P-201ENST00000493031 276 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC011352.1-201ENST00000512300 793 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RNU6-430P-201ENST00000517078 107 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AP003467.2-201ENST00000520175 319 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC134698.4-201ENST00000523451 826 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RPL21P5-201ENST00000554662 472 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 TPRKBP2-201ENST00000565969 475 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 MIR3939-201ENST00000582614 106 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AL353997.4-201ENST00000586196 166 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC091979.2-201ENST00000607514 214 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC103710.1-201ENST00000610003 901 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 WT1-AS_8.1-201ENST00000615200 275 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 SAGE2P-201ENST00000420011 2126 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AL049780.3-201ENST00000624612 1583 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AL359922.3-201ENST00000624779 1670 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AL450326.2-201ENST00000421913 1962 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AL731566.1-201ENST00000620490 1937 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 RNU6-28P-201ENST00000362378 107 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 SNORD82-201ENST00000365530 70 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 SNORD115.1-201ENST00000391109 76 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 SLC9B1P2-201ENST00000398120 1184 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 MIR548F1-201ENST00000408667 84 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 TMSB10P2-201ENST00000416049 131 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 C1DP2-201ENST00000418167 426 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC012065.2-201ENST00000421295 375 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AL590233.1-201ENST00000430017 456 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC073614.1-201ENST00000438690 650 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AL450263.2-201ENST00000439400 589 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 RPL9P6-201ENST00000492764 598 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC091133.4-201ENST00000511142 308 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 RN7SKP244-201ENST00000516513 307 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 MED28P5-201ENST00000528254 438 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC053481.3-201ENST00000577881 843 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC025588.3-201ENST00000604182 274 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AL161729.4-201ENST00000604650 476 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AL022154.1-201ENST00000604698 785 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC138649.3-201ENST00000622154 254 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 OR5H6-203ENST00000642105 978 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 AC006971.1-201ENST00000407916 4486 ntBASIC4.72□□□□□ -1.65
TDP1Q9NUW8 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
TDP1Q9NUW8 LINC01109-201ENST00000603837 3081 ntBASIC4.71□□□□□ -1.65
TDP1Q9NUW8 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
TDP1Q9NUW8 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.71□□□□□ -1.65
TDP1Q9NUW8 MFSD8-242ENST00000641690 4199 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 SALL4P2-201ENST00000423288 2910 ntBASIC4.71□□□□□ -1.66
TDP1Q9NUW8 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.71□□□□□ -1.66
TDP1Q9NUW8 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms