Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 EEF1B2P4-201ENST00000551398 348 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 AL121834.1-201ENST00000572284 509 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 AC023575.1-201ENST00000580510 358 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 MIR4512-201ENST00000583257 77 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 AL390208.1-201ENST00000605885 644 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 AC007684.1-201ENST00000609671 477 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 MIR6716-201ENST00000613413 80 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 SEPT14P19-203ENST00000633205 211 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 OR5AK4P-201ENST00000635912 903 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 FAM157B-203ENST00000639350 358 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 AC093535.2-201ENST00000624769 2326 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.75□□□□□ -1.65
TDP1Q9NUW8 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
TDP1Q9NUW8 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 ANKRD36BP1-202ENST00000604892 1417 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 DDX18P3-201ENST00000404856 2007 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 CCT4P2-201ENST00000233836 1548 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 BTBD10P2-201ENST00000404779 676 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 RPL31P45-201ENST00000419532 356 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 GLRXP1-201ENST00000423261 334 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC098824.1-201ENST00000453565 980 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 ISCUP1-201ENST00000454451 448 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 RNU6-513P-201ENST00000516104 104 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 RNA5SP249-201ENST00000516127 99 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 RNU6-506P-201ENST00000516553 94 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 SNORA18.6-201ENST00000516792 115 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 RNU6-1003P-201ENST00000517099 105 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC020910.2-201ENST00000603635 610 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AC233280.2-201ENST00000603917 1070 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 AL391684.1-202ENST00000641293 1636 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.74□□□□□ -1.65
TDP1Q9NUW8 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TDP1Q9NUW8 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC107068.1-201ENST00000563286 4218 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC097714.1-201ENST00000511272 1647 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RNY4P24-201ENST00000362735 96 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RNU1-130P-201ENST00000363930 160 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RN7SKP227-201ENST00000364445 330 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 ENSAP1-201ENST00000392855 326 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 MTATP6P27-201ENST00000416987 621 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 EIF1P1-201ENST00000421436 341 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RPS12P10-201ENST00000427031 377 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RPS29P17-201ENST00000430795 166 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC011998.1-201ENST00000433403 117 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 RPS20P1-201ENST00000434853 354 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 MTND6P13-201ENST00000443510 523 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 NPM1P49-201ENST00000448027 714 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 BTF3P6-201ENST00000448054 499 ntBASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.73□□□□□ -1.65
TDP1Q9NUW8 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 479.4 ms