Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC087385.1-201ENST00000475062 312 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AP000926.1-201ENST00000479573 241 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 UBE2CP3-201ENST00000502715 450 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC006499.5-201ENST00000505037 514 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 SCARNA14-201ENST00000516903 136 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 HIGD1AP17-201ENST00000554576 276 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC087465.1-201ENST00000560574 245 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AL132657.2-201ENST00000564417 358 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 MIR4504-201ENST00000577413 92 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC012603.1-201ENST00000606424 528 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AL451074.6-201ENST00000608512 729 ntBASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC3Q9BQI4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AL136964.1-201ENST00000622038 2990 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC107982.1-201ENST00000507171 1300 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 Y_RNA.192-201ENST00000363977 102 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 SNORD3H-201ENST00000384486 214 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 MIR513A2-201ENST00000385249 127 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AL160275.2-201ENST00000412010 394 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC004987.3-201ENST00000413879 771 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AL161449.1-201ENST00000414531 1199 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 MTCO3P1-205ENST00000422088 832 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC092447.3-201ENST00000426027 686 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC096638.2-201ENST00000434965 711 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 MTND2P20-201ENST00000440805 661 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 RPL23AP16-201ENST00000441715 421 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 PDSS1P2-201ENST00000449397 678 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC112673.1-201ENST00000513168 575 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC016065.2-201ENST00000514530 444 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 GTF2IP22-201ENST00000554443 182 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 OR4K7P-201ENST00000580232 945 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 SNORD39.3-201ENST00000584451 71 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC009220.3-201ENST00000604318 586 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AL049634.3-201ENST00000604968 457 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC069304.2-201ENST00000605154 435 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC092106.3-201ENST00000611308 722 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 uc_338.32-201ENST00000615087 172 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 AC021755.4-201ENST00000616620 456 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 MIR4496-201ENST00000635896 61 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 MIR4278-201ENST00000636094 69 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 ZNF962P-201ENST00000443465 3140 ntBASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC3Q9BQI4 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 ZNF876P-202ENST00000398732 1485 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 CDR1-202ENST00000625883 1485 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 Y_RNA.25-201ENST00000362528 102 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 RNU5D-1-201ENST00000363299 116 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 RNU6-83P-201ENST00000384568 112 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 MIR93-201ENST00000385024 80 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 RPL23AP47-201ENST00000408017 460 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 RN7SKP177-201ENST00000410567 355 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 AC069218.2-201ENST00000411665 344 ntBASIC3.74□□□□□ -1.81
CCDC3Q9BQI4 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms