Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 PCBP2P3-201ENST00000509726 843 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 RNU6-579P-201ENST00000516879 102 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 IGHV3-76-201ENST00000522465 295 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AP000790.1-201ENST00000528891 737 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 ZNF705CP-201ENST00000530515 889 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC023825.1-201ENST00000566704 1030 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
VPS39Q96JC1 RN7SL703P-201ENST00000578485 302 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC124283.4-201ENST00000581815 456 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC022916.3-201ENST00000592961 742 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC022146.1-201ENST00000595307 847 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 VN1R85P-201ENST00000601587 426 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 SNORA51-201ENST00000606420 132 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AL136370.1-201ENST00000608166 691 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 RNVU1-4-201ENST00000612985 164 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC078880.5-201ENST00000617845 421 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC006249.1-201ENST00000621223 471 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 AL138960.2-201ENST00000625145 535 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC106858.1-201ENST00000637497 429 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS39Q96JC1 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 AC111188.2-201ENST00000529697 1387 ntBASIC3.61□□□□□ -1.83
VPS39Q96JC1 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
VPS39Q96JC1 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS39Q96JC1 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS39Q96JC1 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
VPS39Q96JC1 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS39Q96JC1 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS39Q96JC1 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS39Q96JC1 RNU6-115P-201ENST00000364310 107 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 RPL32P23-201ENST00000397237 405 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AL590704.1-201ENST00000402856 794 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AC109780.2-201ENST00000413467 845 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS39Q96JC1 SDCBPP2-201ENST00000424643 885 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 OSTCP5-201ENST00000425293 453 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 RPL7P2-201ENST00000427639 268 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 RPL23AP16-201ENST00000441715 421 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 NDUFA5P7-201ENST00000452914 242 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 MTND2P39-201ENST00000457230 764 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 RPS20P24-201ENST00000457473 361 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AL133162.1-201ENST00000463228 453 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 RPS23P3-201ENST00000470993 430 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 ACTG1P13-201ENST00000486987 1043 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 FCF1P3-201ENST00000496394 590 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS39Q96JC1 AC093853.1-201ENST00000515689 483 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 RNU5A-7P-201ENST00000515979 116 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AP006245.1-201ENST00000522549 120 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AP000619.3-201ENST00000535634 1127 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 MIR4789-201ENST00000577469 82 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AC090666.1-201ENST00000578241 445 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 SNORD84-203ENST00000584275 78 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 MTATP6P2-201ENST00000603319 678 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AC006077.1-201ENST00000604746 343 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AC068831.7-201ENST00000616954 363 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AL360181.4-201ENST00000621752 134 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 AC080188.3-201ENST00000624842 748 ntBASIC3.6□□□□□ -1.83
VPS39Q96JC1 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS39Q96JC1 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS39Q96JC1 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
VPS39Q96JC1 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS39Q96JC1 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS39Q96JC1 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS39Q96JC1 RNA5SP515-201ENST00000364570 118 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 RNU6-1176P-201ENST00000390955 107 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 MTCO2P31-201ENST00000402702 684 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 GSTA8P-201ENST00000404253 637 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 U3.39-201ENST00000408569 239 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AL133384.1-201ENST00000412744 351 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VPS39Q96JC1 DUTP6-201ENST00000425573 462 ntBASIC3.59□□□□□ -1.83
VPS39Q96JC1 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS39Q96JC1 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms