Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 RNU1-14P-201ENST00000362759 152 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 RNA5SP130-201ENST00000364431 114 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 Y_RNA.318-201ENST00000365131 97 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AL031679.1-201ENST00000400616 525 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 RN7SKP235-201ENST00000410662 305 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AC092647.1-201ENST00000420654 287 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 FNDC3CP-201ENST00000420795 1155 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AL389915.1-201ENST00000422463 466 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AL157831.1-201ENST00000426134 473 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AC005297.2-201ENST00000450430 606 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 VN1R32P-201ENST00000452234 905 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AC091564.1-201ENST00000464563 479 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 RN7SL542P-201ENST00000467147 294 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 RN7SL817P-201ENST00000480777 288 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 FAM172BP-201ENST00000487497 1089 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AC109458.1-201ENST00000508858 316 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 COX6CP8-201ENST00000522620 226 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 OR8L1P-201ENST00000534005 955 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 PCMTD1P2-201ENST00000565017 355 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AC115621.1-201ENST00000604653 858 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AL031775.1-201ENST00000607014 887 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 RNU4-89P-201ENST00000607443 133 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AL158063.1-201ENST00000615349 536 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AL357080.1-201ENST00000617394 239 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 MIR6875-201ENST00000617506 72 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AL445264.1-201ENST00000621719 171 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 MTND4P16-201ENST00000466108 1367 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 AC017104.4-201ENST00000636283 1592 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 NUP58P1-201ENST00000502546 1738 ntBASIC4.34□□□□□ -1.71
HMGB4Q8WW32 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HMGB4Q8WW32 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HMGB4Q8WW32 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.34□□□□□ -1.72
HMGB4Q8WW32 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
HMGB4Q8WW32 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HMGB4Q8WW32 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 OR51H2P-202ENST00000641424 3046 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 Z73965.1-201ENST00000623412 2297 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 MAPK10-286ENST00000641208 8747 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AC090229.1-201ENST00000590983 1609 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AL356473.1-201ENST00000406203 1408 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 Y_RNA.51-201ENST00000362725 102 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 RNU1-83P-201ENST00000363426 164 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 Y_RNA.201-201ENST00000364052 96 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 RNU6-343P-201ENST00000364709 104 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 SNORA62.3-201ENST00000365110 153 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 MIR153-1-201ENST00000384914 90 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 MTND4LP20-201ENST00000402379 270 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 RPL21P65-201ENST00000406094 466 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 BTF3L4P1-201ENST00000413813 468 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AC108032.1-201ENST00000416706 207 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 GLRXP1-201ENST00000423261 334 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 Z74021.1-201ENST00000423610 407 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 RPL21P91-201ENST00000429231 479 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 MUPP-201ENST00000438111 566 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 TRIM60P18-201ENST00000441518 828 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 HMGB3P9-201ENST00000441799 583 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 RPL21P89-201ENST00000444021 467 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 BX322784.1-201ENST00000455793 1077 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AC034236.1-201ENST00000469891 373 ntBASIC4.33□□□□□ -1.72
HMGB4Q8WW32 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms