Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 HMGN2P6-201ENST00000551091 273 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 NCAPGP2-201ENST00000557911 754 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC009127.3-201ENST00000570531 403 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 RPS3AP23-202ENST00000574601 686 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 MIR4658-201ENST00000584344 65 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 U73023.1-201ENST00000603134 700 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 IGHV3-29-201ENST00000604817 344 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 VIS1.1-201ENST00000610517 203 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC100793.4-201ENST00000613683 429 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC009090.3-201ENST00000616553 565 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 WARS-244ENST00000627608 123 ntTSL 5 BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 MIR203B-201ENST00000636080 86 ntBASIC1.61□□□□□ -2.15
LINC00643Q86TS7 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
LINC00643Q86TS7 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AL109809.4-201ENST00000603520 2185 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 HSPE1P11-201ENST00000339579 310 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 MIR22-201ENST00000362190 85 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 MDM4-202ENST00000367180 547 ntTSL 3 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RNU6-1181P-201ENST00000384191 106 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 SNORA9-201ENST00000384215 133 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 SNORA7.4-201ENST00000384249 137 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RNU6-171P-201ENST00000384354 107 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RNU6-1072P-201ENST00000384703 107 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RNU6-443P-201ENST00000384780 107 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RPL32P23-201ENST00000397237 405 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 LSM5-205ENST00000409952 687 ntTSL 4 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 LSM5-206ENST00000409987 504 ntTSL 5 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RAB9AP4-201ENST00000415230 609 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RCC2P2-201ENST00000422174 918 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 LAMTOR3P1-201ENST00000428620 370 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 UBE2V1P6-201ENST00000430840 422 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 ATP5F1P1-201ENST00000433775 569 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RABEPKP1-201ENST00000440529 1026 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC073387.1-201ENST00000453261 709 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 HMGB1P15-201ENST00000453854 435 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RPL23AP31-201ENST00000456160 467 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC126121.1-201ENST00000482313 553 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RPS27P21-201ENST00000486977 252 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC021678.1-201ENST00000505195 936 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC112673.1-201ENST00000513168 575 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC093853.1-201ENST00000515689 483 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RN7SKP272-201ENST00000516988 232 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC008739.2-201ENST00000597006 317 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC007566.2-201ENST00000603642 413 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC069304.3-201ENST00000603938 1084 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AL049829.3-202ENST00000604278 711 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC019131.2-201ENST00000609071 870 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC138932.5-201ENST00000617759 563 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC112484.5-201ENST00000624189 228 ntBASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC1.6□□□□□ -2.15
LINC00643Q86TS7 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.15
LINC00643Q86TS7 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
LINC00643Q86TS7 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.15
LINC00643Q86TS7 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
LINC00643Q86TS7 HMGB1P5-201ENST00000255320 642 ntBASIC1.59□□□□□ -2.15
LINC00643Q86TS7 RNU4-35P-201ENST00000362588 141 ntBASIC1.59□□□□□ -2.15
LINC00643Q86TS7 OR52E6-202ENST00000379946 954 ntBASIC1.59□□□□□ -2.15
LINC00643Q86TS7 AP002784.2-201ENST00000397300 549 ntBASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms