Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIM2P55344 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIM2P55344 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
LIM2P55344 RNU6-251P-201ENST00000363235 104 ntBASIC3.27□□□□□ -1.89
LIM2P55344 RNU4-51P-201ENST00000364206 140 ntBASIC3.27□□□□□ -1.89
LIM2P55344 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
LIM2P55344 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
LIM2P55344 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
LIM2P55344 MIR217-201ENST00000384817 110 ntBASIC3.27□□□□□ -1.89
LIM2P55344 SNORD17-201ENST00000390930 237 ntBASIC3.27□□□□□ -1.89
LIM2P55344 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.27□□□□□ -1.89
LIM2P55344 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.27□□□□□ -1.89
LIM2P55344 RNU6-55P-201ENST00000411092 107 ntBASIC3.27□□□□□ -1.89
LIM2P55344 RNU6-954P-201ENST00000411355 107 ntBASIC3.27□□□□□ -1.89
LIM2P55344 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.27□□□□□ -1.89
LIM2P55344 AC092832.1-201ENST00000422934 400 ntBASIC3.27□□□□□ -1.89
LIM2P55344 FTH1P6-201ENST00000430768 320 ntBASIC3.27□□□□□ -1.89
LIM2P55344 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.27□□□□□ -1.89
LIM2P55344 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.27□□□□□ -1.89
LIM2P55344 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC3.27□□□□□ -1.89
LIM2P55344 AC239367.2-201ENST00000447309 705 ntBASIC3.27□□□□□ -1.89
LIM2P55344 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LIM2P55344 PDSS1P2-201ENST00000449397 678 ntBASIC3.27□□□□□ -1.89
LIM2P55344 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LIM2P55344 AC119751.4-201ENST00000507498 357 ntBASIC3.27□□□□□ -1.89
LIM2P55344 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LIM2P55344 RN7SKP157-201ENST00000516174 282 ntBASIC3.27□□□□□ -1.89
LIM2P55344 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.27□□□□□ -1.89
LIM2P55344 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.27□□□□□ -1.89
LIM2P55344 OR4A45P-201ENST00000529954 901 ntBASIC3.27□□□□□ -1.89
LIM2P55344 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.27□□□□□ -1.89
LIM2P55344 AP001317.1-201ENST00000531194 960 ntBASIC3.27□□□□□ -1.89
LIM2P55344 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.27□□□□□ -1.89
LIM2P55344 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.27□□□□□ -1.89
LIM2P55344 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.27□□□□□ -1.89
LIM2P55344 AC135001.1-201ENST00000544546 283 ntBASIC3.27□□□□□ -1.89
LIM2P55344 MIR1254-2-201ENST00000579553 63 ntBASIC3.27□□□□□ -1.89
LIM2P55344 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.27□□□□□ -1.89
LIM2P55344 AL022067.1-201ENST00000602426 454 ntBASIC3.27□□□□□ -1.89
LIM2P55344 AC112220.2-201ENST00000605513 533 ntBASIC3.27□□□□□ -1.89
LIM2P55344 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.27□□□□□ -1.89
LIM2P55344 AL139022.2-201ENST00000606934 443 ntBASIC3.27□□□□□ -1.89
LIM2P55344 U3.45-201ENST00000607547 219 ntBASIC3.27□□□□□ -1.89
LIM2P55344 AC104985.3-201ENST00000623479 597 ntBASIC3.27□□□□□ -1.89
LIM2P55344 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.27□□□□□ -1.89
LIM2P55344 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIM2P55344 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LIM2P55344 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIM2P55344 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
LIM2P55344 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
LIM2P55344 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
LIM2P55344 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
LIM2P55344 AL645937.1-201ENST00000641739 1652 ntBASIC3.27□□□□□ -1.89
LIM2P55344 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.26□□□□□ -1.89
LIM2P55344 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LIM2P55344 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LIM2P55344 AC032011.1-201ENST00000611703 1549 ntBASIC3.26□□□□□ -1.89
LIM2P55344 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
LIM2P55344 RNU4-35P-201ENST00000362588 141 ntBASIC3.26□□□□□ -1.89
LIM2P55344 RNU6-582P-201ENST00000362989 107 ntBASIC3.26□□□□□ -1.89
LIM2P55344 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC3.26□□□□□ -1.89
LIM2P55344 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.26□□□□□ -1.89
LIM2P55344 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.26□□□□□ -1.89
LIM2P55344 RNU6-1226P-201ENST00000384317 107 ntBASIC3.26□□□□□ -1.89
LIM2P55344 MIR449B-201ENST00000384995 97 ntBASIC3.26□□□□□ -1.89
LIM2P55344 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
LIM2P55344 EIF5P1-201ENST00000400019 1231 ntBASIC3.26□□□□□ -1.89
LIM2P55344 RSL24D1P1-201ENST00000404972 493 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AL355379.1-201ENST00000405542 640 ntBASIC3.26□□□□□ -1.89
LIM2P55344 RN7SKP27-201ENST00000410684 333 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AC073264.1-201ENST00000411508 416 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AL133384.1-201ENST00000412744 351 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.26□□□□□ -1.89
LIM2P55344 BX842559.1-201ENST00000419615 532 ntBASIC3.26□□□□□ -1.89
LIM2P55344 MTCYBP24-201ENST00000420387 1106 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AC069157.1-201ENST00000421749 137 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AC093698.1-201ENST00000423843 571 ntBASIC3.26□□□□□ -1.89
LIM2P55344 RPF2P1-201ENST00000424137 906 ntBASIC3.26□□□□□ -1.89
LIM2P55344 Z93242.1-201ENST00000427102 353 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.26□□□□□ -1.89
LIM2P55344 USP9YP7-201ENST00000436723 430 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.26□□□□□ -1.89
LIM2P55344 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.26□□□□□ -1.89
LIM2P55344 USP9YP32-201ENST00000452432 430 ntBASIC3.26□□□□□ -1.89
LIM2P55344 NPM1P13-201ENST00000452663 865 ntBASIC3.26□□□□□ -1.89
LIM2P55344 MTATP6P14-201ENST00000455189 673 ntBASIC3.26□□□□□ -1.89
LIM2P55344 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.26□□□□□ -1.89
LIM2P55344 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.26□□□□□ -1.89
LIM2P55344 AC010401.1-201ENST00000463867 348 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AC069528.1-202ENST00000482888 637 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AC079203.1-201ENST00000487972 404 ntBASIC3.26□□□□□ -1.89
LIM2P55344 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.26□□□□□ -1.89
LIM2P55344 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.26□□□□□ -1.89
LIM2P55344 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.26□□□□□ -1.89
LIM2P55344 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.26□□□□□ -1.89
LIM2P55344 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.26□□□□□ -1.89
LIM2P55344 HIGD1AP3-201ENST00000515857 278 ntBASIC3.26□□□□□ -1.89
LIM2P55344 SNORA70.19-201ENST00000516717 90 ntBASIC3.26□□□□□ -1.89
LIM2P55344 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.26□□□□□ -1.89
LIM2P55344 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 126.5 ms