Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 USP9YP32-201ENST00000452432 430 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC1P18827 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC1P18827 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC1P18827 AP000873.1-201ENST00000463987 400 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AC103987.1-201ENST00000473394 348 ntBASIC3.32□□□□□ -1.88
SDC1P18827 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC1P18827 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC1P18827 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC1P18827 HMGN1P11-201ENST00000508668 303 ntBASIC3.32□□□□□ -1.88
SDC1P18827 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SDC1P18827 MTCYBP37-201ENST00000510642 1133 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.32□□□□□ -1.88
SDC1P18827 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC1P18827 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.32□□□□□ -1.88
SDC1P18827 Vault.1-201ENST00000516474 102 ntBASIC3.32□□□□□ -1.88
SDC1P18827 MIR2276-201ENST00000516886 89 ntBASIC3.32□□□□□ -1.88
SDC1P18827 IGKV2-23-201ENST00000518729 323 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AP001317.1-201ENST00000531194 960 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.32□□□□□ -1.88
SDC1P18827 AC092470.1-201ENST00000546187 132 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.32□□□□□ -1.88
SDC1P18827 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC3.32□□□□□ -1.88
SDC1P18827 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC1P18827 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.32□□□□□ -1.88
SDC1P18827 AC103710.3-201ENST00000608157 948 ntBASIC3.32□□□□□ -1.88
SDC1P18827 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC1P18827 AL391497.1-201ENST00000608671 547 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AC068722.2-201ENST00000618734 544 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AC068831.8-201ENST00000620171 435 ntBASIC3.32□□□□□ -1.88
SDC1P18827 MIR6810-201ENST00000622701 70 ntBASIC3.32□□□□□ -1.88
SDC1P18827 AL512506.2-201ENST00000624472 458 ntBASIC3.32□□□□□ -1.88
SDC1P18827 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.32□□□□□ -1.88
SDC1P18827 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.32□□□□□ -1.88
SDC1P18827 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
SDC1P18827 PABPC1P7-201ENST00000413177 1513 ntBASIC3.32□□□□□ -1.88
SDC1P18827 MTCO1P24-201ENST00000515438 1558 ntBASIC3.32□□□□□ -1.88
SDC1P18827 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SDC1P18827 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.32□□□□□ -1.88
SDC1P18827 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SDC1P18827 AP005901.5-201ENST00000545779 1796 ntBASIC3.31□□□□□ -1.88
SDC1P18827 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SDC1P18827 RN7SKP227-201ENST00000364445 330 ntBASIC3.31□□□□□ -1.88
SDC1P18827 Y_RNA.472-201ENST00000384322 102 ntBASIC3.31□□□□□ -1.88
SDC1P18827 KRR1P1-201ENST00000419430 803 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AL035423.1-201ENST00000420331 213 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.31□□□□□ -1.88
SDC1P18827 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.31□□□□□ -1.88
SDC1P18827 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC1P18827 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.31□□□□□ -1.88
SDC1P18827 AC093155.1-201ENST00000440164 826 ntBASIC3.31□□□□□ -1.88
SDC1P18827 NOTCH2P1-201ENST00000443481 624 ntBASIC3.31□□□□□ -1.88
SDC1P18827 EXOSC3P1-201ENST00000448649 500 ntBASIC3.31□□□□□ -1.88
SDC1P18827 HMGB3P8-201ENST00000449709 577 ntBASIC3.31□□□□□ -1.88
SDC1P18827 RPL12P26-201ENST00000452430 487 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AC010401.1-201ENST00000463867 348 ntBASIC3.31□□□□□ -1.88
SDC1P18827 RPL23AP14-201ENST00000468281 468 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AC021205.2-201ENST00000480069 347 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AC069528.1-202ENST00000482888 637 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AC084024.2-201ENST00000503480 791 ntBASIC3.31□□□□□ -1.88
SDC1P18827 NDUFB4P9-201ENST00000511646 388 ntBASIC3.31□□□□□ -1.88
SDC1P18827 SNORA48.10-201ENST00000516965 160 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC1P18827 IGKV2D-36-201ENST00000518643 226 ntBASIC3.31□□□□□ -1.88
SDC1P18827 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC1P18827 ARL2BPP5-201ENST00000523141 481 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC1P18827 PDCL2P2-201ENST00000533651 189 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.31□□□□□ -1.88
SDC1P18827 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.31□□□□□ -1.88
SDC1P18827 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC1P18827 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC1P18827 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.31□□□□□ -1.88
SDC1P18827 AC067852.3-201ENST00000589177 561 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AC020914.6-201ENST00000594327 272 ntBASIC3.31□□□□□ -1.88
SDC1P18827 GAS5-AS1-201ENST00000602767 694 ntBASIC3.31□□□□□ -1.88
SDC1P18827 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.31□□□□□ -1.88
SDC1P18827 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.31□□□□□ -1.88
SDC1P18827 AC008121.2-201ENST00000614647 523 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AC121761.2-201ENST00000617300 689 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AC010975.3-201ENST00000618727 978 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AL158163.2-201ENST00000619110 700 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AL121895.2-201ENST00000619558 447 ntBASIC3.31□□□□□ -1.88
SDC1P18827 AC110801.1-201ENST00000623590 212 ntBASIC3.31□□□□□ -1.88
SDC1P18827 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.31□□□□□ -1.88
SDC1P18827 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.31□□□□□ -1.88
SDC1P18827 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
SDC1P18827 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
SDC1P18827 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
SDC1P18827 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.31□□□□□ -1.88
SDC1P18827 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.3□□□□□ -1.88
SDC1P18827 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.3□□□□□ -1.88
SDC1P18827 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.3□□□□□ -1.88
SDC1P18827 AC032011.1-201ENST00000611703 1549 ntBASIC3.3□□□□□ -1.88
SDC1P18827 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SDC1P18827 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SDC1P18827 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
SDC1P18827 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SDC1P18827 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms