Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 HSPE1P23-201ENST00000509838 286 ntBASIC3.79□□□□□ -1.8
SSX4O60224 FTH1P9-201ENST00000513251 355 ntBASIC3.79□□□□□ -1.8
SSX4O60224 RNU6-1129P-201ENST00000515964 104 ntBASIC3.79□□□□□ -1.8
SSX4O60224 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.79□□□□□ -1.8
SSX4O60224 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SSX4O60224 CYCSP2-201ENST00000558168 301 ntBASIC3.79□□□□□ -1.8
SSX4O60224 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.79□□□□□ -1.8
SSX4O60224 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.79□□□□□ -1.8
SSX4O60224 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC3.79□□□□□ -1.8
SSX4O60224 AL109618.2-201ENST00000605527 211 ntBASIC3.79□□□□□ -1.8
SSX4O60224 MIR486-1-201ENST00000612171 68 ntBASIC3.79□□□□□ -1.8
SSX4O60224 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.79□□□□□ -1.8
SSX4O60224 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SSX4O60224 AC019278.1-201ENST00000623516 479 ntBASIC3.79□□□□□ -1.8
SSX4O60224 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.79□□□□□ -1.8
SSX4O60224 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.79□□□□□ -1.8
SSX4O60224 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.79□□□□□ -1.8
SSX4O60224 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SSX4O60224 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.79□□□□□ -1.8
SSX4O60224 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
SSX4O60224 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SSX4O60224 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.79□□□□□ -1.8
SSX4O60224 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SSX4O60224 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX4O60224 ACTR3BP2-202ENST00000623630 1338 ntBASIC3.78□□□□□ -1.8
SSX4O60224 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX4O60224 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX4O60224 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 RNU6-1200P-201ENST00000384162 107 ntBASIC3.78□□□□□ -1.8
SSX4O60224 DHFRP6-201ENST00000401776 268 ntBASIC3.78□□□□□ -1.8
SSX4O60224 SNORA3C-201ENST00000408792 125 ntBASIC3.78□□□□□ -1.8
SSX4O60224 PIGPP2-201ENST00000411569 458 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX4O60224 MTCYBP24-201ENST00000420387 1106 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AL953862.1-201ENST00000423016 168 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AL049610.1-201ENST00000423374 372 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC093698.1-201ENST00000423843 571 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC011742.1-201ENST00000431448 434 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 RPL23AP74-201ENST00000437246 471 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX4O60224 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.78□□□□□ -1.8
SSX4O60224 RPL5P32-201ENST00000454085 879 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC069499.1-201ENST00000489433 509 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC012170.1-201ENST00000495139 359 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX4O60224 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.78□□□□□ -1.8
SSX4O60224 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX4O60224 RN7SKP116-201ENST00000516902 319 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX4O60224 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX4O60224 AL139174.1-201ENST00000531489 886 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC092851.1-201ENST00000535964 478 ntBASIC3.78□□□□□ -1.8
SSX4O60224 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 OR6C73P-201ENST00000546432 358 ntBASIC3.78□□□□□ -1.8
SSX4O60224 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX4O60224 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.78□□□□□ -1.8
SSX4O60224 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.78□□□□□ -1.8
SSX4O60224 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.78□□□□□ -1.8
SSX4O60224 AC107954.1-201ENST00000565906 727 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX4O60224 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX4O60224 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX4O60224 AC004987.4-201ENST00000603383 338 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC112230.1-201ENST00000604342 547 ntBASIC3.78□□□□□ -1.8
SSX4O60224 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.78□□□□□ -1.8
SSX4O60224 U73479.1-201ENST00000618062 168 ntBASIC3.78□□□□□ -1.8
SSX4O60224 AC103706.2-201ENST00000638080 240 ntBASIC3.78□□□□□ -1.8
SSX4O60224 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SSX4O60224 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 AC095050.2-201ENST00000510748 1458 ntBASIC3.78□□□□□ -1.8
SSX4O60224 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 NUP58P1-201ENST00000502546 1738 ntBASIC3.78□□□□□ -1.8
SSX4O60224 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.78□□□□□ -1.8
SSX4O60224 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
SSX4O60224 LINC00561-201ENST00000565815 2738 ntBASIC3.78□□□□□ -1.8
SSX4O60224 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SSX4O60224 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
SSX4O60224 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.77□□□□□ -1.81
SSX4O60224 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SSX4O60224 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
SSX4O60224 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
SSX4O60224 OR5P1P-201ENST00000299512 925 ntBASIC3.77□□□□□ -1.81
SSX4O60224 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
SSX4O60224 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SSX4O60224 RNU6-263P-201ENST00000363811 107 ntBASIC3.77□□□□□ -1.81
SSX4O60224 RNU1-64P-201ENST00000365443 163 ntBASIC3.77□□□□□ -1.81
SSX4O60224 RNA5SP366-201ENST00000365454 123 ntBASIC3.77□□□□□ -1.81
SSX4O60224 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.77□□□□□ -1.81
SSX4O60224 SNORD66.1-201ENST00000391230 76 ntBASIC3.77□□□□□ -1.81
SSX4O60224 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.77□□□□□ -1.81
SSX4O60224 AL121972.1-201ENST00000402023 252 ntBASIC3.77□□□□□ -1.81
SSX4O60224 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.77□□□□□ -1.81
SSX4O60224 RNA5SP56-201ENST00000410277 118 ntBASIC3.77□□□□□ -1.81
SSX4O60224 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms