Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HIF3AQ9Y2N7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HIF3AQ9Y2N7 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 AL049812.1-201ENST00000432563 2267 ntBASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 PRKY-204ENST00000533551 1019 ntBASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HIF3AQ9Y2N7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 THEM4-205ENST00000489410 643 ntTSL 2 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HIF3AQ9Y2N7 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
HIF3AQ9Y2N7 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HIF3AQ9Y2N7 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HIF3AQ9Y2N7 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.32■□□□□ 0.36
HIF3AQ9Y2N7 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HIF3AQ9Y2N7 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HIF3AQ9Y2N7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
HIF3AQ9Y2N7 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.32■□□□□ 0.36
HIF3AQ9Y2N7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms