Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NOD1Q9Y239 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 NEK4P2-201ENST00000580004 1012 ntBASIC21.19■□□□□ 0.98
NOD1Q9Y239 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.19■□□□□ 0.98
NOD1Q9Y239 AC116407.4-201ENST00000623319 1061 ntBASIC21.19■□□□□ 0.98
NOD1Q9Y239 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 AL691432.2-201ENST00000607222 2038 ntBASIC21.19■□□□□ 0.98
NOD1Q9Y239 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NOD1Q9Y239 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NOD1Q9Y239 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
NOD1Q9Y239 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NOD1Q9Y239 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
NOD1Q9Y239 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.18■□□□□ 0.98
NOD1Q9Y239 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.18■□□□□ 0.98
NOD1Q9Y239 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NOD1Q9Y239 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NOD1Q9Y239 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NOD1Q9Y239 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NOD1Q9Y239 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC21.18■□□□□ 0.98
NOD1Q9Y239 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.18■□□□□ 0.98
NOD1Q9Y239 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NOD1Q9Y239 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NOD1Q9Y239 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NOD1Q9Y239 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
NOD1Q9Y239 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NOD1Q9Y239 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
NOD1Q9Y239 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NOD1Q9Y239 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.18■□□□□ 0.98
NOD1Q9Y239 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
NOD1Q9Y239 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 ZNF444P1-201ENST00000559497 298 ntBASIC21.17■□□□□ 0.98
NOD1Q9Y239 AL136038.3-201ENST00000561909 1096 ntBASIC21.17■□□□□ 0.98
NOD1Q9Y239 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NOD1Q9Y239 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.17■□□□□ 0.98
NOD1Q9Y239 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NOD1Q9Y239 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NOD1Q9Y239 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NOD1Q9Y239 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NOD1Q9Y239 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.16■□□□□ 0.98
NOD1Q9Y239 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
NOD1Q9Y239 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NOD1Q9Y239 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 GCSHP2-201ENST00000560971 527 ntBASIC21.16■□□□□ 0.98
NOD1Q9Y239 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC21.16■□□□□ 0.98
NOD1Q9Y239 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.16■□□□□ 0.98
NOD1Q9Y239 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NOD1Q9Y239 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NOD1Q9Y239 AC073314.1-201ENST00000568729 2216 ntBASIC21.15■□□□□ 0.98
NOD1Q9Y239 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NOD1Q9Y239 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NOD1Q9Y239 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
NOD1Q9Y239 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
NOD1Q9Y239 TPM4P1-201ENST00000436100 807 ntBASIC21.15■□□□□ 0.98
NOD1Q9Y239 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.15■□□□□ 0.98
NOD1Q9Y239 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.15■□□□□ 0.98
NOD1Q9Y239 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.15■□□□□ 0.98
NOD1Q9Y239 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NOD1Q9Y239 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NOD1Q9Y239 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
NOD1Q9Y239 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NOD1Q9Y239 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NOD1Q9Y239 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
NOD1Q9Y239 AC007375.3-201ENST00000600936 2314 ntBASIC21.15■□□□□ 0.98
NOD1Q9Y239 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NOD1Q9Y239 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.14■□□□□ 0.98
NOD1Q9Y239 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
NOD1Q9Y239 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms