Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC36.56■■■■□ 3.44
SHROOM4Q9ULL8 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC36.55■■■■□ 3.44
SHROOM4Q9ULL8 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC36.55■■■■□ 3.44
SHROOM4Q9ULL8 GOLGA2P11-201ENST00000562660 1621 ntBASIC36.55■■■■□ 3.44
SHROOM4Q9ULL8 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC36.55■■■■□ 3.44
SHROOM4Q9ULL8 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC36.55■■■■□ 3.44
SHROOM4Q9ULL8 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC36.55■■■■□ 3.44
SHROOM4Q9ULL8 MIR3652-201ENST00000579335 131 ntBASIC36.55■■■■□ 3.44
SHROOM4Q9ULL8 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC36.55■■■■□ 3.44
SHROOM4Q9ULL8 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC36.54■■■■□ 3.44
SHROOM4Q9ULL8 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC36.54■■■■□ 3.44
SHROOM4Q9ULL8 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC36.54■■■■□ 3.44
SHROOM4Q9ULL8 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC36.54■■■■□ 3.44
SHROOM4Q9ULL8 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC36.54■■■■□ 3.44
SHROOM4Q9ULL8 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC36.54■■■■□ 3.44
SHROOM4Q9ULL8 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC36.54■■■■□ 3.44
SHROOM4Q9ULL8 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC36.54■■■■□ 3.44
SHROOM4Q9ULL8 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC36.54■■■■□ 3.44
SHROOM4Q9ULL8 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC36.53■■■■□ 3.44
SHROOM4Q9ULL8 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC36.53■■■■□ 3.44
SHROOM4Q9ULL8 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC36.53■■■■□ 3.44
SHROOM4Q9ULL8 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC36.53■■■■□ 3.44
SHROOM4Q9ULL8 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC36.53■■■■□ 3.44
SHROOM4Q9ULL8 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC36.53■■■■□ 3.44
SHROOM4Q9ULL8 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC36.52■■■■□ 3.44
SHROOM4Q9ULL8 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC36.52■■■■□ 3.44
SHROOM4Q9ULL8 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC36.52■■■■□ 3.44
SHROOM4Q9ULL8 AL022342.1-201ENST00000400363 863 ntBASIC36.52■■■■□ 3.44
SHROOM4Q9ULL8 AP003041.3-201ENST00000527151 707 ntBASIC36.52■■■■□ 3.44
SHROOM4Q9ULL8 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC36.52■■■■□ 3.44
SHROOM4Q9ULL8 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC36.52■■■■□ 3.44
SHROOM4Q9ULL8 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC36.52■■■■□ 3.44
SHROOM4Q9ULL8 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC36.52■■■■□ 3.44
SHROOM4Q9ULL8 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC36.52■■■■□ 3.44
SHROOM4Q9ULL8 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC36.51■■■■□ 3.44
SHROOM4Q9ULL8 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC36.51■■■■□ 3.44
SHROOM4Q9ULL8 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.44
SHROOM4Q9ULL8 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC36.51■■■■□ 3.44
SHROOM4Q9ULL8 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC36.51■■■■□ 3.44
SHROOM4Q9ULL8 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC36.51■■■■□ 3.44
SHROOM4Q9ULL8 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC36.51■■■■□ 3.44
SHROOM4Q9ULL8 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC36.51■■■■□ 3.44
SHROOM4Q9ULL8 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC36.51■■■■□ 3.43
SHROOM4Q9ULL8 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC36.51■■■■□ 3.43
SHROOM4Q9ULL8 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 AC092119.3-201ENST00000612618 583 ntBASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 LINC01311-201ENST00000565162 1445 ntBASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 KRT8P41-201ENST00000533985 1514 ntBASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC36.5■■■■□ 3.43
SHROOM4Q9ULL8 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 USP39-204ENST00000409766 2033 ntTSL 2 BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 DERL1-203ENST00000419562 918 ntTSL 2 BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 AL160286.2-201ENST00000567150 934 ntBASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC36.49■■■■□ 3.43
SHROOM4Q9ULL8 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC36.48■■■■□ 3.43
SHROOM4Q9ULL8 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC36.48■■■■□ 3.43
SHROOM4Q9ULL8 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC36.48■■■■□ 3.43
SHROOM4Q9ULL8 PHB2-202ENST00000440277 996 ntTSL 5 BASIC36.48■■■■□ 3.43
SHROOM4Q9ULL8 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC36.48■■■■□ 3.43
SHROOM4Q9ULL8 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC36.47■■■■□ 3.43
SHROOM4Q9ULL8 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC36.47■■■■□ 3.43
SHROOM4Q9ULL8 AL645929.1-201ENST00000420084 975 ntBASIC36.47■■■■□ 3.43
SHROOM4Q9ULL8 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC36.47■■■■□ 3.43
SHROOM4Q9ULL8 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC36.47■■■■□ 3.43
SHROOM4Q9ULL8 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC36.47■■■■□ 3.43
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms