Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
LIMA1Q9UHB6 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
LIMA1Q9UHB6 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
LIMA1Q9UHB6 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 AC098934.4-201ENST00000564127 592 ntBASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
LIMA1Q9UHB6 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
LIMA1Q9UHB6 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMA1Q9UHB6 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMA1Q9UHB6 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIMA1Q9UHB6 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
LIMA1Q9UHB6 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMA1Q9UHB6 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMA1Q9UHB6 SOX15-203ENST00000570788 1093 ntBASIC21■□□□□ 0.95
LIMA1Q9UHB6 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 AC008687.6-201ENST00000596318 630 ntBASIC21■□□□□ 0.95
LIMA1Q9UHB6 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21■□□□□ 0.95
LIMA1Q9UHB6 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
LIMA1Q9UHB6 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
LIMA1Q9UHB6 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
LIMA1Q9UHB6 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 AC135050.7-201ENST00000624508 2218 ntBASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 AC005082.1-201ENST00000413042 2259 ntBASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
LIMA1Q9UHB6 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 AL138781.1-201ENST00000566567 1274 ntBASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 AC083906.6-201ENST00000641366 219 ntBASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
LIMA1Q9UHB6 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms