Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.46■□□□□ 0.87
USP41Q3LFD5 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.46■□□□□ 0.87
USP41Q3LFD5 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.46■□□□□ 0.87
USP41Q3LFD5 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.46■□□□□ 0.87
USP41Q3LFD5 MYC-208ENST00000641036 567 ntBASIC20.46■□□□□ 0.87
USP41Q3LFD5 AC099778.1-201ENST00000568593 1911 ntBASIC20.46■□□□□ 0.87
USP41Q3LFD5 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP41Q3LFD5 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP41Q3LFD5 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP41Q3LFD5 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.45■□□□□ 0.86
USP41Q3LFD5 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.45■□□□□ 0.86
USP41Q3LFD5 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP41Q3LFD5 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.45■□□□□ 0.86
USP41Q3LFD5 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.45■□□□□ 0.86
USP41Q3LFD5 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP41Q3LFD5 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP41Q3LFD5 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.45■□□□□ 0.86
USP41Q3LFD5 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.45■□□□□ 0.86
USP41Q3LFD5 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
USP41Q3LFD5 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
USP41Q3LFD5 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP41Q3LFD5 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.45■□□□□ 0.86
USP41Q3LFD5 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP41Q3LFD5 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.45■□□□□ 0.86
USP41Q3LFD5 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP41Q3LFD5 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
USP41Q3LFD5 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
USP41Q3LFD5 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
USP41Q3LFD5 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 AC140113.3-201ENST00000605663 199 ntBASIC20.44■□□□□ 0.86
USP41Q3LFD5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.44■□□□□ 0.86
USP41Q3LFD5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP41Q3LFD5 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP41Q3LFD5 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
USP41Q3LFD5 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.43■□□□□ 0.86
USP41Q3LFD5 AL031133.1-201ENST00000406807 723 ntBASIC20.43■□□□□ 0.86
USP41Q3LFD5 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.43■□□□□ 0.86
USP41Q3LFD5 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.43■□□□□ 0.86
USP41Q3LFD5 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP41Q3LFD5 AC091076.1-201ENST00000610741 619 ntBASIC20.43■□□□□ 0.86
USP41Q3LFD5 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
USP41Q3LFD5 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP41Q3LFD5 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
USP41Q3LFD5 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP41Q3LFD5 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP41Q3LFD5 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
USP41Q3LFD5 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP41Q3LFD5 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
USP41Q3LFD5 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.43■□□□□ 0.86
USP41Q3LFD5 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 HOMER2P1-201ENST00000455653 964 ntBASIC20.42■□□□□ 0.86
USP41Q3LFD5 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
USP41Q3LFD5 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.42■□□□□ 0.86
USP41Q3LFD5 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
USP41Q3LFD5 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
USP41Q3LFD5 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms