Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CDH6P55285 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.01■□□□□ 0.79
CDH6P55285 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDH6P55285 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDH6P55285 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CDH6P55285 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20■□□□□ 0.79
CDH6P55285 TNXA-203ENST00000507684 2038 ntBASIC20■□□□□ 0.79
CDH6P55285 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
CDH6P55285 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CDH6P55285 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20■□□□□ 0.79
CDH6P55285 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20■□□□□ 0.79
CDH6P55285 HLA-A-209ENST00000638375 975 ntBASIC20■□□□□ 0.79
CDH6P55285 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20■□□□□ 0.79
CDH6P55285 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20■□□□□ 0.79
CDH6P55285 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20■□□□□ 0.79
CDH6P55285 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CDH6P55285 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CDH6P55285 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20■□□□□ 0.79
CDH6P55285 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CDH6P55285 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20■□□□□ 0.79
CDH6P55285 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
CDH6P55285 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDH6P55285 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDH6P55285 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDH6P55285 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDH6P55285 AL049812.1-201ENST00000432563 2267 ntBASIC19.99■□□□□ 0.79
CDH6P55285 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.99■□□□□ 0.79
CDH6P55285 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.99■□□□□ 0.79
CDH6P55285 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.99■□□□□ 0.79
CDH6P55285 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.99■□□□□ 0.79
CDH6P55285 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CDH6P55285 KRT16P5-201ENST00000455284 522 ntBASIC19.99■□□□□ 0.79
CDH6P55285 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDH6P55285 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDH6P55285 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CDH6P55285 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CDH6P55285 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.99■□□□□ 0.79
CDH6P55285 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDH6P55285 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CDH6P55285 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CDH6P55285 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDH6P55285 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDH6P55285 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.98■□□□□ 0.79
CDH6P55285 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDH6P55285 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.98■□□□□ 0.79
CDH6P55285 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.98■□□□□ 0.79
CDH6P55285 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDH6P55285 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CDH6P55285 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDH6P55285 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.98■□□□□ 0.79
CDH6P55285 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CDH6P55285 AC133681.1-201ENST00000465482 601 ntBASIC19.98■□□□□ 0.79
CDH6P55285 AC110285.5-201ENST00000611501 352 ntBASIC19.98■□□□□ 0.79
CDH6P55285 ITM2C-210ENST00000620962 501 ntBASIC19.98■□□□□ 0.79
CDH6P55285 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CDH6P55285 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.98■□□□□ 0.79
CDH6P55285 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDH6P55285 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDH6P55285 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.98■□□□□ 0.79
CDH6P55285 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.98■□□□□ 0.79
CDH6P55285 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDH6P55285 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.97■□□□□ 0.79
CDH6P55285 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.97■□□□□ 0.79
CDH6P55285 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.97■□□□□ 0.79
CDH6P55285 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.97■□□□□ 0.79
CDH6P55285 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.97■□□□□ 0.79
CDH6P55285 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.97■□□□□ 0.79
CDH6P55285 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.97■□□□□ 0.79
CDH6P55285 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.97■□□□□ 0.79
CDH6P55285 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CDH6P55285 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.97■□□□□ 0.79
CDH6P55285 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CDH6P55285 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CDH6P55285 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CDH6P55285 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms