Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
USF1P22415 AP000692.2-201ENST00000608391 879 ntBASIC16.28■□□□□ 0.2
USF1P22415 AC011298.2-201ENST00000617989 482 ntBASIC16.28■□□□□ 0.2
USF1P22415 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.28■□□□□ 0.2
USF1P22415 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
USF1P22415 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
USF1P22415 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
USF1P22415 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
USF1P22415 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
USF1P22415 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
USF1P22415 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
USF1P22415 RCC2P6-201ENST00000526625 1557 ntBASIC16.27■□□□□ 0.2
USF1P22415 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.27■□□□□ 0.2
USF1P22415 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
USF1P22415 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC16.27■□□□□ 0.2
USF1P22415 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.27■□□□□ 0.2
USF1P22415 AC004951.3-201ENST00000418645 1148 ntBASIC16.27■□□□□ 0.2
USF1P22415 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.27■□□□□ 0.2
USF1P22415 BX664615.1-201ENST00000443558 458 ntBASIC16.27■□□□□ 0.2
USF1P22415 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.27■□□□□ 0.2
USF1P22415 LINC01238-205ENST00000567549 1107 ntBASIC16.27■□□□□ 0.2
USF1P22415 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
USF1P22415 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.27■□□□□ 0.2
USF1P22415 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
USF1P22415 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
USF1P22415 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
USF1P22415 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
USF1P22415 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
USF1P22415 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.27■□□□□ 0.19
USF1P22415 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
USF1P22415 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
USF1P22415 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC16.26■□□□□ 0.19
USF1P22415 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.26■□□□□ 0.19
USF1P22415 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.26■□□□□ 0.19
USF1P22415 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
USF1P22415 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC16.26■□□□□ 0.19
USF1P22415 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.26■□□□□ 0.19
USF1P22415 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
USF1P22415 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.26■□□□□ 0.19
USF1P22415 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.26■□□□□ 0.19
USF1P22415 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.26■□□□□ 0.19
USF1P22415 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.26■□□□□ 0.19
USF1P22415 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.26■□□□□ 0.19
USF1P22415 AC116562.4-202ENST00000641738 218 ntBASIC16.26■□□□□ 0.19
USF1P22415 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.26■□□□□ 0.19
USF1P22415 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.26■□□□□ 0.19
USF1P22415 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
USF1P22415 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
USF1P22415 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
USF1P22415 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
USF1P22415 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.25■□□□□ 0.19
USF1P22415 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
USF1P22415 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.25■□□□□ 0.19
USF1P22415 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
USF1P22415 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
USF1P22415 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.25■□□□□ 0.19
USF1P22415 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
USF1P22415 CCR12P-201ENST00000446203 998 ntBASIC16.25■□□□□ 0.19
USF1P22415 FAM207BP-201ENST00000447172 505 ntBASIC16.25■□□□□ 0.19
USF1P22415 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.25■□□□□ 0.19
USF1P22415 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.25■□□□□ 0.19
USF1P22415 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.25■□□□□ 0.19
USF1P22415 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
USF1P22415 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
USF1P22415 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.25■□□□□ 0.19
USF1P22415 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms