Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.49■□□□□ 0.55
COL5A1P20908 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.49■□□□□ 0.55
COL5A1P20908 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.49■□□□□ 0.55
COL5A1P20908 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.49■□□□□ 0.55
COL5A1P20908 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.49■□□□□ 0.55
COL5A1P20908 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.49■□□□□ 0.55
COL5A1P20908 AC111152.3-201ENST00000569699 673 ntBASIC18.49■□□□□ 0.55
COL5A1P20908 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL5A1P20908 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL5A1P20908 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL5A1P20908 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.48■□□□□ 0.55
COL5A1P20908 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
COL5A1P20908 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL5A1P20908 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.48■□□□□ 0.55
COL5A1P20908 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
COL5A1P20908 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL5A1P20908 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL5A1P20908 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.48■□□□□ 0.55
COL5A1P20908 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.48■□□□□ 0.55
COL5A1P20908 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.48■□□□□ 0.55
COL5A1P20908 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL5A1P20908 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A1P20908 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A1P20908 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A1P20908 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
COL5A1P20908 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.47■□□□□ 0.55
COL5A1P20908 AC034232.1-201ENST00000506026 1064 ntBASIC18.47■□□□□ 0.55
COL5A1P20908 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.47■□□□□ 0.55
COL5A1P20908 MIR4674-201ENST00000582457 87 ntBASIC18.47■□□□□ 0.55
COL5A1P20908 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.47■□□□□ 0.55
COL5A1P20908 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.47■□□□□ 0.55
COL5A1P20908 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.47■□□□□ 0.55
COL5A1P20908 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.47■□□□□ 0.55
COL5A1P20908 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A1P20908 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A1P20908 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A1P20908 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
COL5A1P20908 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A1P20908 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.47■□□□□ 0.55
COL5A1P20908 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A1P20908 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL5A1P20908 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.47■□□□□ 0.55
COL5A1P20908 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
COL5A1P20908 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.46■□□□□ 0.55
COL5A1P20908 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
COL5A1P20908 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.46■□□□□ 0.55
COL5A1P20908 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.46■□□□□ 0.55
COL5A1P20908 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.46■□□□□ 0.55
COL5A1P20908 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
COL5A1P20908 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.46■□□□□ 0.55
COL5A1P20908 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.46■□□□□ 0.55
COL5A1P20908 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
COL5A1P20908 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL5A1P20908 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
COL5A1P20908 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.46■□□□□ 0.55
COL5A1P20908 AC009237.14-201ENST00000609975 1594 ntBASIC18.46■□□□□ 0.55
COL5A1P20908 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
COL5A1P20908 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 RASA4DP-201ENST00000460726 1199 ntBASIC18.46■□□□□ 0.55
COL5A1P20908 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.46■□□□□ 0.55
COL5A1P20908 MIR3180-1-201ENST00000580374 94 ntBASIC18.46■□□□□ 0.55
COL5A1P20908 MIR3180-3-201ENST00000584616 94 ntBASIC18.46■□□□□ 0.55
COL5A1P20908 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.46■□□□□ 0.55
COL5A1P20908 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL5A1P20908 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
COL5A1P20908 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.46■□□□□ 0.54
COL5A1P20908 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.45■□□□□ 0.54
COL5A1P20908 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A1P20908 AC036111.1-201ENST00000533973 1582 ntBASIC18.45■□□□□ 0.54
COL5A1P20908 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A1P20908 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL5A1P20908 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
COL5A1P20908 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.45■□□□□ 0.54
COL5A1P20908 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.45■□□□□ 0.54
COL5A1P20908 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
COL5A1P20908 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms