Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.94■□□□□ 0.78
VCANP13611 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
VCANP13611 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.94■□□□□ 0.78
VCANP13611 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.94■□□□□ 0.78
VCANP13611 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.93■□□□□ 0.78
VCANP13611 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.93■□□□□ 0.78
VCANP13611 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.93■□□□□ 0.78
VCANP13611 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.93■□□□□ 0.78
VCANP13611 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.93■□□□□ 0.78
VCANP13611 LINC01711-201ENST00000598340 967 ntBASIC19.93■□□□□ 0.78
VCANP13611 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.93■□□□□ 0.78
VCANP13611 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.93■□□□□ 0.78
VCANP13611 AC018553.1-201ENST00000616682 1458 ntBASIC19.93■□□□□ 0.78
VCANP13611 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.93■□□□□ 0.78
VCANP13611 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.93■□□□□ 0.78
VCANP13611 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VCANP13611 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.93■□□□□ 0.78
VCANP13611 Z83836.1-201ENST00000624605 1642 ntBASIC19.92■□□□□ 0.78
VCANP13611 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCANP13611 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VCANP13611 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCANP13611 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.92■□□□□ 0.78
VCANP13611 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC19.92■□□□□ 0.78
VCANP13611 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.92■□□□□ 0.78
VCANP13611 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCANP13611 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCANP13611 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCANP13611 FAM197Y8-203ENST00000450145 560 ntBASIC19.92■□□□□ 0.78
VCANP13611 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.92■□□□□ 0.78
VCANP13611 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCANP13611 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.92■□□□□ 0.78
VCANP13611 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.92■□□□□ 0.78
VCANP13611 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VCANP13611 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.92■□□□□ 0.78
VCANP13611 COX20P2-201ENST00000452636 358 ntBASIC19.92■□□□□ 0.78
VCANP13611 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
VCANP13611 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
VCANP13611 AC027601.4-201ENST00000611259 610 ntBASIC19.92■□□□□ 0.78
VCANP13611 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.92■□□□□ 0.78
VCANP13611 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
VCANP13611 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.91■□□□□ 0.78
VCANP13611 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.91■□□□□ 0.78
VCANP13611 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
VCANP13611 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC19.91■□□□□ 0.78
VCANP13611 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC19.91■□□□□ 0.78
VCANP13611 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.91■□□□□ 0.78
VCANP13611 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.91■□□□□ 0.78
VCANP13611 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
VCANP13611 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.91■□□□□ 0.78
VCANP13611 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.91■□□□□ 0.78
VCANP13611 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.91■□□□□ 0.78
VCANP13611 KRT8P41-201ENST00000533985 1514 ntBASIC19.91■□□□□ 0.78
VCANP13611 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.91■□□□□ 0.78
VCANP13611 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
VCANP13611 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCANP13611 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VCANP13611 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCANP13611 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCANP13611 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCANP13611 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC19.9■□□□□ 0.78
VCANP13611 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VCANP13611 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VCANP13611 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VCANP13611 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
VCANP13611 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VCANP13611 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.9■□□□□ 0.78
VCANP13611 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
VCANP13611 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
VCANP13611 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
VCANP13611 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
VCANP13611 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.89■□□□□ 0.78
VCANP13611 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
VCANP13611 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCANP13611 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VCANP13611 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.89■□□□□ 0.77
VCANP13611 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VCANP13611 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
VCANP13611 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VCANP13611 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms