Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RB1P06400 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RB1P06400 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RB1P06400 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
RB1P06400 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RB1P06400 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RB1P06400 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.36■□□□□ 0.85
RB1P06400 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.36■□□□□ 0.85
RB1P06400 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
RB1P06400 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.35■□□□□ 0.85
RB1P06400 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RB1P06400 AC016734.2-201ENST00000624325 1377 ntBASIC20.35■□□□□ 0.85
RB1P06400 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.35■□□□□ 0.85
RB1P06400 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RB1P06400 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.35■□□□□ 0.85
RB1P06400 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RB1P06400 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.35■□□□□ 0.85
RB1P06400 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.35■□□□□ 0.85
RB1P06400 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
RB1P06400 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
RB1P06400 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RB1P06400 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
RB1P06400 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.34■□□□□ 0.85
RB1P06400 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
RB1P06400 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 AL845331.1-201ENST00000424978 1190 ntBASIC20.34■□□□□ 0.85
RB1P06400 NUS1P1-201ENST00000446295 882 ntBASIC20.34■□□□□ 0.85
RB1P06400 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.34■□□□□ 0.85
RB1P06400 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.34■□□□□ 0.85
RB1P06400 MIR3180-1-201ENST00000580374 94 ntBASIC20.34■□□□□ 0.85
RB1P06400 MIR3180-3-201ENST00000584616 94 ntBASIC20.34■□□□□ 0.85
RB1P06400 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RB1P06400 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.34■□□□□ 0.85
RB1P06400 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
RB1P06400 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RB1P06400 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RB1P06400 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RB1P06400 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC20.34■□□□□ 0.85
RB1P06400 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
RB1P06400 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RB1P06400 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RB1P06400 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RB1P06400 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RB1P06400 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.33■□□□□ 0.85
RB1P06400 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
RB1P06400 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RB1P06400 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.33■□□□□ 0.85
RB1P06400 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RB1P06400 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RB1P06400 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.33■□□□□ 0.85
RB1P06400 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.33■□□□□ 0.85
RB1P06400 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RB1P06400 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
RB1P06400 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
RB1P06400 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.32■□□□□ 0.84
RB1P06400 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
RB1P06400 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.32■□□□□ 0.84
RB1P06400 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.32■□□□□ 0.84
RB1P06400 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.32■□□□□ 0.84
RB1P06400 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.32■□□□□ 0.84
RB1P06400 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.32■□□□□ 0.84
RB1P06400 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.32■□□□□ 0.84
RB1P06400 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.32■□□□□ 0.84
RB1P06400 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.32■□□□□ 0.84
RB1P06400 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.32■□□□□ 0.84
RB1P06400 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
RB1P06400 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RB1P06400 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RB1P06400 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.31■□□□□ 0.84
RB1P06400 KRT8P10-201ENST00000450021 1447 ntBASIC20.31■□□□□ 0.84
RB1P06400 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RB1P06400 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RB1P06400 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RB1P06400 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RB1P06400 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.31■□□□□ 0.84
RB1P06400 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.31■□□□□ 0.84
RB1P06400 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.31■□□□□ 0.84
RB1P06400 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.31■□□□□ 0.84
RB1P06400 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms