Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
PTCD1O75127 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PTCD1O75127 AP000523.1-201ENST00000398242 1049 ntBASIC24.69■■□□□ 1.54
PTCD1O75127 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC24.69■■□□□ 1.54
PTCD1O75127 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC24.69■■□□□ 1.54
PTCD1O75127 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC24.69■■□□□ 1.54
PTCD1O75127 ZNF444P1-201ENST00000559497 298 ntBASIC24.69■■□□□ 1.54
PTCD1O75127 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC24.69■■□□□ 1.54
PTCD1O75127 NEK4P2-201ENST00000580004 1012 ntBASIC24.69■■□□□ 1.54
PTCD1O75127 AC069148.1-201ENST00000608741 768 ntBASIC24.69■■□□□ 1.54
PTCD1O75127 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
PTCD1O75127 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC24.69■■□□□ 1.54
PTCD1O75127 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
PTCD1O75127 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
PTCD1O75127 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PTCD1O75127 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
PTCD1O75127 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC24.69■■□□□ 1.54
PTCD1O75127 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
PTCD1O75127 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCD1O75127 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PTCD1O75127 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC24.68■■□□□ 1.54
PTCD1O75127 PKD1P6-201ENST00000343738 4769 ntBASIC24.68■■□□□ 1.54
PTCD1O75127 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC24.68■■□□□ 1.54
PTCD1O75127 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCD1O75127 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PTCD1O75127 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCD1O75127 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PTCD1O75127 SPDYE15P-201ENST00000424157 909 ntBASIC24.68■■□□□ 1.54
PTCD1O75127 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC24.68■■□□□ 1.54
PTCD1O75127 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC24.68■■□□□ 1.54
PTCD1O75127 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCD1O75127 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC24.68■■□□□ 1.54
PTCD1O75127 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
PTCD1O75127 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
PTCD1O75127 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC24.68■■□□□ 1.54
PTCD1O75127 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC24.67■■□□□ 1.54
PTCD1O75127 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC24.67■■□□□ 1.54
PTCD1O75127 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC24.67■■□□□ 1.54
PTCD1O75127 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 STARP1-201ENST00000397973 869 ntBASIC24.67■■□□□ 1.54
PTCD1O75127 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
PTCD1O75127 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC24.67■■□□□ 1.54
PTCD1O75127 CLEC4GP1-201ENST00000596555 870 ntBASIC24.67■■□□□ 1.54
PTCD1O75127 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 LINC01311-201ENST00000565162 1445 ntBASIC24.67■■□□□ 1.54
PTCD1O75127 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
PTCD1O75127 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
PTCD1O75127 AL157384.1-201ENST00000445995 2473 ntBASIC24.67■■□□□ 1.54
PTCD1O75127 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC24.66■■□□□ 1.54
PTCD1O75127 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
PTCD1O75127 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 LY6E-213ENST00000522528 606 ntTSL 3 BASIC24.66■■□□□ 1.54
PTCD1O75127 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC24.66■■□□□ 1.54
PTCD1O75127 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC24.66■■□□□ 1.54
PTCD1O75127 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.66■■□□□ 1.54
PTCD1O75127 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCD1O75127 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC24.65■■□□□ 1.54
PTCD1O75127 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCD1O75127 AC104417.2-201ENST00000562989 1793 ntBASIC24.65■■□□□ 1.54
PTCD1O75127 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCD1O75127 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCD1O75127 TPM4P1-201ENST00000436100 807 ntBASIC24.65■■□□□ 1.54
PTCD1O75127 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC24.65■■□□□ 1.54
PTCD1O75127 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC24.65■■□□□ 1.54
PTCD1O75127 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC24.65■■□□□ 1.54
PTCD1O75127 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PTCD1O75127 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCD1O75127 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCD1O75127 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
PTCD1O75127 GABARAPL3-202ENST00000624044 1851 ntBASIC24.64■■□□□ 1.54
PTCD1O75127 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
PTCD1O75127 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.54
PTCD1O75127 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
PTCD1O75127 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC24.64■■□□□ 1.54
PTCD1O75127 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms