Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AL603825.1-201ENST00000438481 80 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 IFNA11P-201ENST00000446352 526 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 RN7SL75P-201ENST00000461926 281 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 RPS20P22-201ENST00000473700 357 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 IGKV3-31-201ENST00000523109 329 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 CTSLP2-204ENST00000629029 392 ntBASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 METTL8-219ENST00000640734 726 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC88AQ3V6T2 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 RPL31P1-201ENST00000398116 372 ntBASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 RPS4XP7-201ENST00000406274 780 ntBASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 AL159169.1-201ENST00000421119 127 ntBASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 UBE2D3P1-201ENST00000436669 444 ntBASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 RPL7P12-201ENST00000446719 750 ntBASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 AC008716.1-201ENST00000511084 513 ntBASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 FAM60DP-201ENST00000524174 632 ntBASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 AL121839.1-201ENST00000556233 1185 ntBASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC88AQ3V6T2 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 OR51A3P-201ENST00000413596 924 ntBASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 RPS15AP6-201ENST00000420703 385 ntBASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 RNU7-170P-201ENST00000459303 61 ntBASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 ATP5F1P7-201ENST00000567330 760 ntBASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 AP003072.5-201ENST00000623872 773 ntBASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 MTND5P19-201ENST00000424872 1794 ntBASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 SMC4P1-201ENST00000414479 527 ntBASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 RPS29P6-201ENST00000438196 145 ntBASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 RPS29P21-201ENST00000496272 170 ntBASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC88AQ3V6T2 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 RLIMP2-201ENST00000427891 1563 ntBASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 AL445437.1-201ENST00000623157 3087 ntBASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 AL590290.1-201ENST00000405336 380 ntBASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 AL162388.1-201ENST00000450912 352 ntBASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 AC126121.1-201ENST00000482313 553 ntBASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 RNA5SP320-201ENST00000516263 124 ntBASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 AC090819.1-201ENST00000523800 1111 ntBASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 AC091515.1-201ENST00000548110 679 ntBASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 AL845331.3-202ENST00000562856 261 ntBASIC3.36□□□□□ -1.87
CCDC88AQ3V6T2 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 AC009302.1-201ENST00000417147 390 ntBASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 DPH3P2-201ENST00000422618 250 ntBASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 AC096725.1-201ENST00000514266 313 ntBASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 RNU6-991P-201ENST00000516168 107 ntBASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 AC243972.3-201ENST00000539655 198 ntBASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 CD24P2-201ENST00000565486 219 ntBASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 SNORD39.2-201ENST00000579995 76 ntBASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.35□□□□□ -1.87
CCDC88AQ3V6T2 OR10AB1P-202ENST00000641219 1686 ntBASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC88AQ3V6T2 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 127.3 ms