Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
PTPN4P29074 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
PTPN4P29074 MTND5P31-201ENST00000419366 1374 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 ZNF734P-201ENST00000419494 1534 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
PTPN4P29074 RNA5SP119-201ENST00000362715 117 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 SNORD46.1-201ENST00000364139 104 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 RNU6-353P-201ENST00000364266 108 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 SNORA70.4-201ENST00000365509 134 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN4P29074 U1.1-201ENST00000384101 164 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 MIR199A2-201ENST00000385289 110 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 TAF13P2-201ENST00000416876 286 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN4P29074 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN4P29074 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
PTPN4P29074 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN4P29074 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 VN1R17P-201ENST00000472048 1090 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 HMGB1P38-201ENST00000490557 577 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 AC005726.1-201ENST00000494679 427 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 AC091860.1-201ENST00000505723 432 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 RNA5SP208-201ENST00000516156 78 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.66□□□□□ -1.82
PTPN4P29074 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
PTPN4P29074 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.66□□□□□ -1.82
PTPN4P29074 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.66□□□□□ -1.82
PTPN4P29074 MIR3186-201ENST00000577404 85 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN4P29074 AC090666.1-201ENST00000578241 445 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.66□□□□□ -1.82
PTPN4P29074 AC008507.2-201ENST00000588402 1176 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 BNIP3P27-201ENST00000599991 412 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 AL355812.1-201ENST00000603215 216 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.66□□□□□ -1.82
PTPN4P29074 AL034408.1-202ENST00000636088 415 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 AC139713.2-210ENST00000641741 992 ntBASIC3.66□□□□□ -1.82
PTPN4P29074 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
PTPN4P29074 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
PTPN4P29074 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
PTPN4P29074 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.66□□□□□ -1.82
PTPN4P29074 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.66□□□□□ -1.82
PTPN4P29074 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
PTPN4P29074 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
PTPN4P29074 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
PTPN4P29074 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.65□□□□□ -1.82
PTPN4P29074 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
PTPN4P29074 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
PTPN4P29074 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
PTPN4P29074 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
PTPN4P29074 AP002088.1-201ENST00000382740 395 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 SNORA5A-201ENST00000384111 134 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 RNU6-328P-201ENST00000390887 106 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 RPL21P17-201ENST00000397467 475 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
PTPN4P29074 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.65□□□□□ -1.83
PTPN4P29074 AL139247.1-201ENST00000422768 325 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 RPL21P66-201ENST00000426566 466 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC3.65□□□□□ -1.83
PTPN4P29074 AL591419.1-201ENST00000427423 339 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 VDAC1P3-201ENST00000434069 851 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 BX679664.1-201ENST00000434429 253 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 AL645931.1-201ENST00000439737 410 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 RNF2P1-201ENST00000442955 1010 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 PRDX3P4-201ENST00000470828 747 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 RPS4XP22-201ENST00000480755 780 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 AC008427.1-201ENST00000503102 655 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 HMGN1P11-201ENST00000508668 303 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.65□□□□□ -1.83
PTPN4P29074 ARL2BPP5-201ENST00000523141 481 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC3.65□□□□□ -1.83
PTPN4P29074 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.65□□□□□ -1.83
PTPN4P29074 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.65□□□□□ -1.83
PTPN4P29074 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.65□□□□□ -1.83
PTPN4P29074 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.65□□□□□ -1.83
PTPN4P29074 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.65□□□□□ -1.83
PTPN4P29074 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.65□□□□□ -1.83
PTPN4P29074 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.65□□□□□ -1.83
PTPN4P29074 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.65□□□□□ -1.83
PTPN4P29074 AC068722.2-201ENST00000618734 544 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 AC092628.2-201ENST00000622492 339 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 AC073530.2-201ENST00000623987 261 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.65□□□□□ -1.83
PTPN4P29074 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.65□□□□□ -1.83
PTPN4P29074 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.65□□□□□ -1.83
PTPN4P29074 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
PTPN4P29074 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
PTPN4P29074 AP001350.1-201ENST00000601906 1524 ntBASIC3.65□□□□□ -1.83
PTPN4P29074 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.64□□□□□ -1.83
PTPN4P29074 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
PTPN4P29074 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.64□□□□□ -1.83
PTPN4P29074 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
PTPN4P29074 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
PTPN4P29074 MIR208A-201ENST00000362287 71 ntBASIC3.64□□□□□ -1.83
PTPN4P29074 SNORA63.1-201ENST00000362493 131 ntBASIC3.64□□□□□ -1.83
PTPN4P29074 RNA5SP235-201ENST00000365411 114 ntBASIC3.64□□□□□ -1.83
PTPN4P29074 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
PTPN4P29074 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.64□□□□□ -1.83
PTPN4P29074 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms