Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC010881.1-201ENST00000433830 235 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 AP000893.1-201ENST00000474462 794 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC5.45□□□□□ -1.54
COL8A1P27658 AC109481.1-201ENST00000509173 282 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 AC096745.1-201ENST00000509945 370 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 TBCAP3-201ENST00000512475 312 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 RFPL4AP3-201ENST00000515267 345 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 RNU6-202P-201ENST00000515998 96 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.45□□□□□ -1.54
COL8A1P27658 AC024405.2-202ENST00000532731 184 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 MRPS36P4-201ENST00000534436 298 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.45□□□□□ -1.54
COL8A1P27658 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.45□□□□□ -1.54
COL8A1P27658 AC026371.1-201ENST00000551867 419 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 AL049779.2-201ENST00000553847 315 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC5.45□□□□□ -1.54
COL8A1P27658 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.45□□□□□ -1.54
COL8A1P27658 AC024619.4-201ENST00000580924 316 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 AC017100.2-201ENST00000584628 355 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.45□□□□□ -1.54
COL8A1P27658 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC5.45□□□□□ -1.54
COL8A1P27658 AC010463.3-201ENST00000594077 500 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL8A1P27658 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL8A1P27658 AL356274.1-201ENST00000617064 410 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.45□□□□□ -1.54
COL8A1P27658 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
COL8A1P27658 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.45□□□□□ -1.54
COL8A1P27658 IMMTP1-201ENST00000435590 2219 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 LRRC37A16P-202ENST00000586022 3725 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL8A1P27658 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.45□□□□□ -1.54
COL8A1P27658 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC5.45□□□□□ -1.54
COL8A1P27658 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.45□□□□□ -1.54
COL8A1P27658 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC5.45□□□□□ -1.54
COL8A1P27658 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC5.45□□□□□ -1.54
COL8A1P27658 AL596244.1-201ENST00000567068 3779 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL8A1P27658 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.45□□□□□ -1.54
COL8A1P27658 AC093278.2-201ENST00000564956 2485 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 AC009404.1-201ENST00000420330 3090 ntTSL 3 BASIC5.44□□□□□ -1.54
COL8A1P27658 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 SRBD1-201ENST00000263736 3681 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 RBMY1HP-201ENST00000382759 1389 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 LY86-AS1-202ENST00000435641 2819 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 NFIA-201ENST00000357977 3200 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 RNU6-1266P-201ENST00000362794 105 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 RNU6-61P-201ENST00000365528 109 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 DCDC2-201ENST00000378450 3684 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 SNORA56-201ENST00000383966 129 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 Y_RNA.471-201ENST00000384312 102 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 RNU6-441P-201ENST00000384545 106 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 RNU6-417P-201ENST00000384712 107 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 AL445189.1-201ENST00000405722 338 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.44□□□□□ -1.54
COL8A1P27658 AC245096.1-201ENST00000413104 546 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC5.44□□□□□ -1.54
COL8A1P27658 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.44□□□□□ -1.54
COL8A1P27658 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 OR2AQ1P-201ENST00000451972 200 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.44□□□□□ -1.54
COL8A1P27658 RPL21P8-201ENST00000465083 535 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 AC091021.1-201ENST00000468051 388 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 AC098869.1-201ENST00000481627 292 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.44□□□□□ -1.54
COL8A1P27658 RNU6-488P-201ENST00000515918 99 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 RNA5SP116-201ENST00000516132 98 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 SCARNA18.1-201ENST00000516330 83 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
COL8A1P27658 WBP1LP3-201ENST00000523033 208 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC5.44□□□□□ -1.54
COL8A1P27658 AC106782.4-201ENST00000568264 210 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 MIR5095-201ENST00000578844 88 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 MIR4505-201ENST00000582238 73 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 RPS29P30-201ENST00000600975 111 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 AC009902.3-201ENST00000606235 2172 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 MIR6809-201ENST00000612189 116 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 AL118522.2-201ENST00000616045 615 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC5.44□□□□□ -1.54
COL8A1P27658 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.44□□□□□ -1.54
COL8A1P27658 OR13C1P-202ENST00000641378 2919 ntBASIC5.44□□□□□ -1.54
COL8A1P27658 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL8A1P27658 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
COL8A1P27658 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms