Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
VCANP13611 AL359511.1-201ENST00000402970 211 ntBASIC2.67□□□□□ -1.98
VCANP13611 AL354710.1-201ENST00000453641 246 ntBASIC2.67□□□□□ -1.98
VCANP13611 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.67□□□□□ -1.98
VCANP13611 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC2.67□□□□□ -1.98
VCANP13611 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
VCANP13611 AC091903.1-201ENST00000624322 454 ntBASIC2.67□□□□□ -1.98
VCANP13611 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC2.67□□□□□ -1.98
VCANP13611 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC2.67□□□□□ -1.98
VCANP13611 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC2.67□□□□□ -1.98
VCANP13611 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
VCANP13611 TRMT112P2-201ENST00000512910 132 ntBASIC2.67□□□□□ -1.98
VCANP13611 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
VCANP13611 MIR3199-1-201ENST00000582434 88 ntBASIC2.67□□□□□ -1.98
VCANP13611 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.67□□□□□ -1.98
VCANP13611 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
VCANP13611 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.67□□□□□ -1.98
VCANP13611 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC2.67□□□□□ -1.98
VCANP13611 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC2.67□□□□□ -1.98
VCANP13611 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
VCANP13611 GSTA9P-201ENST00000406231 611 ntBASIC2.67□□□□□ -1.98
VCANP13611 AC080013.2-201ENST00000460866 323 ntBASIC2.67□□□□□ -1.98
VCANP13611 LTV1P1-201ENST00000510683 1237 ntBASIC2.67□□□□□ -1.98
VCANP13611 ELOCP31-201ENST00000540463 467 ntBASIC2.67□□□□□ -1.98
VCANP13611 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC2.67□□□□□ -1.98
VCANP13611 AL022099.1-201ENST00000604551 712 ntBASIC2.67□□□□□ -1.98
VCANP13611 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
VCANP13611 GABPAP-201ENST00000419271 1356 ntBASIC2.67□□□□□ -1.98
VCANP13611 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC2.67□□□□□ -1.98
VCANP13611 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.67□□□□□ -1.98
VCANP13611 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
VCANP13611 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
VCANP13611 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC2.66□□□□□ -1.98
VCANP13611 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.66□□□□□ -1.98
VCANP13611 AC011816.1-201ENST00000441346 546 ntBASIC2.66□□□□□ -1.98
VCANP13611 SRIP1-201ENST00000489235 288 ntBASIC2.66□□□□□ -1.98
VCANP13611 NIPA2P2-201ENST00000496376 1083 ntBASIC2.66□□□□□ -1.98
VCANP13611 AC074029.1-201ENST00000552531 1044 ntBASIC2.66□□□□□ -1.98
VCANP13611 OR4T1P-201ENST00000554933 911 ntBASIC2.66□□□□□ -1.98
VCANP13611 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.66□□□□□ -1.98
VCANP13611 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC2.66□□□□□ -1.98
VCANP13611 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
VCANP13611 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC2.66□□□□□ -1.98
VCANP13611 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC2.66□□□□□ -1.98
VCANP13611 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC2.66□□□□□ -1.98
VCANP13611 AC010881.1-201ENST00000433830 235 ntBASIC2.66□□□□□ -1.98
VCANP13611 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC2.66□□□□□ -1.98
VCANP13611 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.66□□□□□ -1.98
VCANP13611 AC004801.2-202ENST00000463559 283 ntBASIC2.66□□□□□ -1.98
VCANP13611 MTCYBP28-201ENST00000566728 1132 ntBASIC2.66□□□□□ -1.98
VCANP13611 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.66□□□□□ -1.98
VCANP13611 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
VCANP13611 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.66□□□□□ -1.98
VCANP13611 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC2.66□□□□□ -1.98
VCANP13611 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC2.66□□□□□ -1.98
VCANP13611 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC2.66□□□□□ -1.98
VCANP13611 AL590639.1-201ENST00000456484 337 ntBASIC2.66□□□□□ -1.98
VCANP13611 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.66□□□□□ -1.98
VCANP13611 SNORA35B-201ENST00000607417 129 ntBASIC2.66□□□□□ -1.98
VCANP13611 AC244517.3-201ENST00000616254 1235 ntBASIC2.66□□□□□ -1.98
VCANP13611 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.66□□□□□ -1.98
VCANP13611 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
VCANP13611 AC012020.1-201ENST00000624541 1728 ntBASIC2.66□□□□□ -1.98
VCANP13611 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC2.65□□□□□ -1.98
VCANP13611 AC004925.1-201ENST00000624256 2706 ntBASIC2.65□□□□□ -1.98
VCANP13611 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC2.65□□□□□ -1.98
VCANP13611 FCF1P1-201ENST00000432690 571 ntBASIC2.65□□□□□ -1.98
VCANP13611 AC034244.2-201ENST00000514668 858 ntBASIC2.65□□□□□ -1.98
VCANP13611 AC025881.1-201ENST00000518851 512 ntBASIC2.65□□□□□ -1.98
VCANP13611 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.65□□□□□ -1.98
VCANP13611 HMGB1P50-201ENST00000605814 607 ntBASIC2.65□□□□□ -1.98
VCANP13611 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC2.65□□□□□ -1.98
VCANP13611 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC2.65□□□□□ -1.98
VCANP13611 MTND4P26-201ENST00000415971 1359 ntBASIC2.65□□□□□ -1.98
VCANP13611 RNU6-55P-201ENST00000411092 107 ntBASIC2.65□□□□□ -1.99
VCANP13611 RNU6-954P-201ENST00000411355 107 ntBASIC2.65□□□□□ -1.99
VCANP13611 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
VCANP13611 SPA17P1-201ENST00000416656 452 ntBASIC2.65□□□□□ -1.99
VCANP13611 U4.3-201ENST00000621047 82 ntBASIC2.65□□□□□ -1.99
VCANP13611 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
VCANP13611 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.65□□□□□ -1.99
VCANP13611 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.64□□□□□ -1.99
VCANP13611 AC245291.1-201ENST00000419501 328 ntBASIC2.64□□□□□ -1.99
VCANP13611 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
VCANP13611 ISCA1P2-201ENST00000438679 421 ntBASIC2.64□□□□□ -1.99
VCANP13611 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.64□□□□□ -1.99
VCANP13611 CACYBPP2-201ENST00000453625 678 ntBASIC2.64□□□□□ -1.99
VCANP13611 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
VCANP13611 NARSP2-201ENST00000518524 679 ntBASIC2.64□□□□□ -1.99
VCANP13611 AC011611.5-201ENST00000552477 578 ntBASIC2.64□□□□□ -1.99
VCANP13611 AC011494.1-201ENST00000596454 237 ntBASIC2.64□□□□□ -1.99
VCANP13611 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
VCANP13611 HMGB1P10-201ENST00000395823 563 ntBASIC2.64□□□□□ -1.99
VCANP13611 RNA5SP270-201ENST00000411361 118 ntBASIC2.64□□□□□ -1.99
VCANP13611 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.64□□□□□ -1.99
VCANP13611 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.64□□□□□ -1.99
VCANP13611 AC007424.1-203ENST00000554613 687 ntBASIC2.64□□□□□ -1.99
VCANP13611 AC063952.1-203ENST00000634410 658 ntBASIC2.64□□□□□ -1.99
VCANP13611 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
VCANP13611 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms