Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
MSH5O43196 DAAM1-201ENST00000360909 4227 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
MSH5O43196 AC009318.1-201ENST00000553105 2380 ntTSL 2 BASIC10.03□□□□□ -0.8
MSH5O43196 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
MSH5O43196 ZKSCAN5-201ENST00000326775 4178 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
MSH5O43196 ILDR2-201ENST00000271417 13140 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
MSH5O43196 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
MSH5O43196 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC10.03□□□□□ -0.8
MSH5O43196 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC10.03□□□□□ -0.8
MSH5O43196 MIR135B-201ENST00000362189 97 ntBASIC10.03□□□□□ -0.8
MSH5O43196 RNU6-590P-201ENST00000365039 107 ntBASIC10.03□□□□□ -0.8
MSH5O43196 RNU6-817P-201ENST00000391083 104 ntBASIC10.03□□□□□ -0.8
MSH5O43196 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC10.03□□□□□ -0.8
MSH5O43196 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC10.03□□□□□ -0.8
MSH5O43196 AL031736.2-201ENST00000426573 787 ntBASIC10.03□□□□□ -0.8
MSH5O43196 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC10.03□□□□□ -0.8
MSH5O43196 AL353705.4-201ENST00000449661 238 ntBASIC10.03□□□□□ -0.8
MSH5O43196 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC10.03□□□□□ -0.8
MSH5O43196 RN7SL456P-201ENST00000469290 295 ntBASIC10.03□□□□□ -0.8
MSH5O43196 SNRPGP3-201ENST00000469405 227 ntBASIC10.03□□□□□ -0.8
MSH5O43196 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC10.03□□□□□ -0.8
MSH5O43196 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC10.03□□□□□ -0.8
MSH5O43196 MIR5588-201ENST00000581890 63 ntBASIC10.03□□□□□ -0.8
MSH5O43196 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
MSH5O43196 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
MSH5O43196 AC092821.3-202ENST00000641304 2767 ntBASIC10.03□□□□□ -0.8
MSH5O43196 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.8
MSH5O43196 TMC1-202ENST00000340019 3068 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.81
MSH5O43196 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC10.02□□□□□ -0.81
MSH5O43196 ABCC4-201ENST00000376887 5839 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
MSH5O43196 RNU2-18P-201ENST00000411224 162 ntBASIC10.02□□□□□ -0.81
MSH5O43196 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
MSH5O43196 RPL7AP51-201ENST00000422016 760 ntBASIC10.02□□□□□ -0.81
MSH5O43196 AC002553.3-201ENST00000453002 341 ntBASIC10.02□□□□□ -0.81
MSH5O43196 AC013429.1-201ENST00000456604 422 ntBASIC10.02□□□□□ -0.81
MSH5O43196 RN7SL705P-201ENST00000481678 294 ntBASIC10.02□□□□□ -0.81
MSH5O43196 AC009869.1-201ENST00000530418 528 ntTSL 4 BASIC10.02□□□□□ -0.81
MSH5O43196 NPPA-AS1_1.1-201ENST00000622391 173 ntBASIC10.02□□□□□ -0.81
MSH5O43196 IQCB2P-201ENST00000401788 1633 ntBASIC10.02□□□□□ -0.81
MSH5O43196 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC10.02□□□□□ -0.81
MSH5O43196 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC10.02□□□□□ -0.81
MSH5O43196 NEK1-208ENST00000512193 4430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.02□□□□□ -0.81
MSH5O43196 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
MSH5O43196 ZNF716-201ENST00000420713 5197 ntAPPRIS P1 TSL 4 BASIC10.02□□□□□ -0.81
MSH5O43196 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
MSH5O43196 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC10.02□□□□□ -0.81
MSH5O43196 GPI-202ENST00000415930 4000 ntTSL 2 BASIC10.02□□□□□ -0.81
MSH5O43196 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC10.02□□□□□ -0.81
MSH5O43196 LINC02208-201ENST00000506769 2803 ntTSL 5 BASIC10.02□□□□□ -0.81
MSH5O43196 MAPK10-338ENST00000641647 3362 ntBASIC10.01□□□□□ -0.81
MSH5O43196 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC10.01□□□□□ -0.81
MSH5O43196 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
MSH5O43196 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC10.01□□□□□ -0.81
MSH5O43196 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
MSH5O43196 LINC02535-201ENST00000455071 2513 ntTSL 2 BASIC10.01□□□□□ -0.81
MSH5O43196 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
MSH5O43196 SNHG14-226ENST00000640631 13074 ntTSL 5 BASIC10.01□□□□□ -0.81
MSH5O43196 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
MSH5O43196 RNA5SP389-201ENST00000362610 115 ntBASIC10.01□□□□□ -0.81
MSH5O43196 RNA5SP226-201ENST00000362653 115 ntBASIC10.01□□□□□ -0.81
MSH5O43196 Y_RNA.329-201ENST00000365209 107 ntBASIC10.01□□□□□ -0.81
MSH5O43196 ATP5J2-203ENST00000394186 305 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
MSH5O43196 PPIAP32-201ENST00000449940 472 ntBASIC10.01□□□□□ -0.81
MSH5O43196 AC012671.1-201ENST00000451912 203 ntBASIC10.01□□□□□ -0.81
MSH5O43196 SNORA35.1-201ENST00000458908 128 ntBASIC10.01□□□□□ -0.81
MSH5O43196 AC005165.2-201ENST00000466070 380 ntBASIC10.01□□□□□ -0.81
MSH5O43196 RPL23AP80-201ENST00000495605 424 ntBASIC10.01□□□□□ -0.81
MSH5O43196 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC10.01□□□□□ -0.81
MSH5O43196 AL157871.3-201ENST00000557231 293 ntBASIC10.01□□□□□ -0.81
MSH5O43196 ZNF192P1-203ENST00000565888 810 ntBASIC10.01□□□□□ -0.81
MSH5O43196 LINC01109-201ENST00000603837 3081 ntBASIC10.01□□□□□ -0.81
MSH5O43196 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
MSH5O43196 AL590065.1-201ENST00000603371 4774 ntBASIC10.01□□□□□ -0.81
MSH5O43196 LINC01427-202ENST00000635258 4566 ntTSL 5 BASIC10□□□□□ -0.81
MSH5O43196 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC10□□□□□ -0.81
MSH5O43196 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC10□□□□□ -0.81
MSH5O43196 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
MSH5O43196 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
MSH5O43196 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC10□□□□□ -0.81
MSH5O43196 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC10□□□□□ -0.81
MSH5O43196 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
MSH5O43196 MIR302B-201ENST00000362188 73 ntBASIC10□□□□□ -0.81
MSH5O43196 Y_RNA.287-201ENST00000364853 94 ntBASIC10□□□□□ -0.81
MSH5O43196 MIR570-201ENST00000384917 97 ntBASIC10□□□□□ -0.81
MSH5O43196 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC10□□□□□ -0.81
MSH5O43196 RNU6-383P-201ENST00000410864 94 ntBASIC10□□□□□ -0.81
MSH5O43196 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC10□□□□□ -0.81
MSH5O43196 PPIAP30-201ENST00000415473 519 ntBASIC10□□□□□ -0.81
MSH5O43196 MICG-208ENST00000416822 132 ntBASIC10□□□□□ -0.81
MSH5O43196 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC10□□□□□ -0.81
MSH5O43196 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC10□□□□□ -0.81
MSH5O43196 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC10□□□□□ -0.81
MSH5O43196 AC010265.1-201ENST00000513509 211 ntBASIC10□□□□□ -0.81
MSH5O43196 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC10□□□□□ -0.81
MSH5O43196 MT1L-202ENST00000566367 78 ntBASIC10□□□□□ -0.81
MSH5O43196 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC10□□□□□ -0.81
MSH5O43196 AC004467.1-201ENST00000615678 330 ntBASIC10□□□□□ -0.81
MSH5O43196 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC10□□□□□ -0.81
MSH5O43196 AC090617.7-201ENST00000623952 126 ntBASIC10□□□□□ -0.81
MSH5O43196 AC091932.3-201ENST00000624223 323 ntBASIC10□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 137.9 ms