Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RNA5SP139-201ENST00000364340 117 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 SNORA6-201ENST00000384033 151 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 MIR30B-201ENST00000384850 88 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 MIR524-201ENST00000385242 87 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 MT-TP-201ENST00000387461 68 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 SNORD17-201ENST00000390930 237 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 RNU2-40P-201ENST00000410833 196 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 HMGB3P2-201ENST00000411913 584 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 TRGV7-201ENST00000427089 353 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC096632.1-201ENST00000427395 310 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 OR4F13P-201ENST00000428478 931 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 CDC27P1-201ENST00000445384 715 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AL359073.1-201ENST00000448036 403 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 RPS20P21-201ENST00000466859 343 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC005532.2-201ENST00000467154 373 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 RPS23P3-201ENST00000470993 430 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 GAPDHP39-201ENST00000481866 979 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 RAC1P5-201ENST00000512182 576 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC026402.1-201ENST00000513642 170 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 RNA5SP92-201ENST00000516437 110 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC103843.2-201ENST00000530523 682 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC109635.4-202ENST00000531666 412 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 PARP1P2-201ENST00000556806 195 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AL590282.1-201ENST00000610379 1136 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC016542.2-201ENST00000624201 619 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 AC026951.1-201ENST00000559530 2459 ntBASIC1.64□□□□□ -2.15
LINC00643Q86TS7 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
LINC00643Q86TS7 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 RNU6-1331P-201ENST00000363658 106 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 RNA5SP509-201ENST00000364577 119 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 RNA5SP51-201ENST00000364750 119 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 ATP5F1P3-201ENST00000397213 657 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 RNU4-72P-201ENST00000410754 173 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AL513331.1-201ENST00000411908 397 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 RPL7P8-201ENST00000411964 730 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 HMGN1P24-201ENST00000412282 298 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 RPL7P37-201ENST00000425095 738 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 ATP6V0E1P4-201ENST00000427294 242 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 SRIP2-201ENST00000428470 166 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 ELOCP11-201ENST00000436690 332 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 ELOCP16-201ENST00000444494 332 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 HMGN1P2-201ENST00000445197 310 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 RPS3AP53-201ENST00000454716 778 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AP002345.1-201ENST00000456493 928 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 RPL7P15-201ENST00000461190 712 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 RPS3AP41-201ENST00000462701 778 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AC090515.1-201ENST00000465295 476 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AC010301.1-201ENST00000473936 355 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AC008638.1-201ENST00000506035 866 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AC113155.1-201ENST00000511141 769 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 TTC39CP1-201ENST00000512513 755 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AC087888.1-201ENST00000550884 1254 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 MIR5004-201ENST00000579078 107 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AC103810.1-201ENST00000579873 453 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 MIR1269B-201ENST00000580405 75 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC1.63□□□□□ -2.15
LINC00643Q86TS7 AC002984.1-201ENST00000591692 448 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 RPS15AP11-201ENST00000594193 385 ntBASIC1.63□□□□□ -2.15
LINC00643Q86TS7 APOOP1-201ENST00000604695 592 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms