Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 FO393422.1-201ENST00000603908 708 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 Mico1.1-201ENST00000611698 204 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 MIR6793-201ENST00000612376 63 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 MIR7155-201ENST00000615925 56 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 NBPF25P-202ENST00000619932 3827 ntTSL 2 BASIC5.47□□□□□ -1.53
COL8A1P27658 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.47□□□□□ -1.53
COL8A1P27658 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.47□□□□□ -1.53
COL8A1P27658 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
COL8A1P27658 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC5.47□□□□□ -1.53
COL8A1P27658 AC005183.1-201ENST00000603687 1979 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 NUP153-201ENST00000262077 5487 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL8A1P27658 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC5.47□□□□□ -1.53
COL8A1P27658 AC134882.1-201ENST00000603738 1676 ntBASIC5.47□□□□□ -1.53
COL8A1P27658 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC5.47□□□□□ -1.53
COL8A1P27658 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC5.46□□□□□ -1.53
COL8A1P27658 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.46□□□□□ -1.53
COL8A1P27658 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC5.46□□□□□ -1.53
COL8A1P27658 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
COL8A1P27658 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL8A1P27658 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL8A1P27658 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL8A1P27658 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
COL8A1P27658 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL8A1P27658 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL8A1P27658 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL8A1P27658 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.46□□□□□ -1.54
COL8A1P27658 SNORD16-201ENST00000362803 99 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 RNU6-511P-201ENST00000363496 107 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
COL8A1P27658 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL8A1P27658 RNU6-1127P-201ENST00000384580 107 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 Y_RNA.576-201ENST00000384781 102 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 U3.20-201ENST00000390909 217 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 AL034374.1-201ENST00000406329 351 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.46□□□□□ -1.54
COL8A1P27658 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.46□□□□□ -1.54
COL8A1P27658 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC5.46□□□□□ -1.54
COL8A1P27658 AC073069.1-201ENST00000428657 441 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 AC097713.2-201ENST00000430199 356 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 AL445305.1-201ENST00000432577 575 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 OR4C10P-201ENST00000434991 931 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.46□□□□□ -1.54
COL8A1P27658 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.46□□□□□ -1.54
COL8A1P27658 MTCO3P2-201ENST00000457365 171 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 RNU7-27P-201ENST00000459281 62 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 AL133445.1-201ENST00000467051 452 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 UBA52P3-201ENST00000491303 382 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL8A1P27658 AC104806.1-201ENST00000508720 308 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 SNORA14.1-201ENST00000516113 141 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 RNU7-4P-201ENST00000516961 62 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 IGHV4-55-201ENST00000520889 368 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 OR10G5P-201ENST00000532733 358 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.46□□□□□ -1.54
COL8A1P27658 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.46□□□□□ -1.54
COL8A1P27658 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
COL8A1P27658 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 CYCSP1-201ENST00000604815 315 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.46□□□□□ -1.54
COL8A1P27658 U2.17-201ENST00000611454 95 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL8A1P27658 MRPL57P1-201ENST00000621486 265 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 AL691477.1-201ENST00000624398 162 ntBASIC5.46□□□□□ -1.54
COL8A1P27658 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.46□□□□□ -1.54
COL8A1P27658 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL8A1P27658 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
COL8A1P27658 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL8A1P27658 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC5.46□□□□□ -1.54
COL8A1P27658 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL8A1P27658 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
COL8A1P27658 AL049634.1-201ENST00000453770 1720 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL8A1P27658 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC5.45□□□□□ -1.54
COL8A1P27658 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL8A1P27658 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.45□□□□□ -1.54
COL8A1P27658 MAPK10-344ENST00000641718 3746 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL8A1P27658 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL8A1P27658 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC5.45□□□□□ -1.54
COL8A1P27658 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL8A1P27658 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL8A1P27658 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL8A1P27658 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC5.45□□□□□ -1.54
COL8A1P27658 RNU6-28P-201ENST00000362378 107 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 RNU1-150P-201ENST00000362491 162 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 RNU6-1317P-201ENST00000364582 104 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 RNU6-1207P-201ENST00000384343 107 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 SNORA22C-201ENST00000384614 134 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 RNU6-959P-201ENST00000384671 107 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 RNU2-6P-201ENST00000411404 190 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 RPLP0P7-201ENST00000416050 667 ntBASIC5.45□□□□□ -1.54
COL8A1P27658 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.45□□□□□ -1.54
COL8A1P27658 CFL1P1-202ENST00000432948 411 ntBASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms