Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AP003973.1-201ENST00000604639 691 ntBASIC3.36□□□□□ -1.87
SDC1P18827 AL365503.1-201ENST00000605247 905 ntBASIC3.36□□□□□ -1.87
SDC1P18827 AC099676.1-201ENST00000608886 657 ntBASIC3.36□□□□□ -1.87
SDC1P18827 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.36□□□□□ -1.87
SDC1P18827 C2orf27A-204ENST00000623058 969 ntBASIC3.36□□□□□ -1.87
SDC1P18827 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SDC1P18827 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
SDC1P18827 AC058791.1-201ENST00000608412 3198 ntBASIC3.35□□□□□ -1.87
SDC1P18827 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
SDC1P18827 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
SDC1P18827 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
SDC1P18827 OTUD4P1-201ENST00000237841 3067 ntBASIC3.35□□□□□ -1.87
SDC1P18827 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
SDC1P18827 HMGB1P5-201ENST00000255320 642 ntBASIC3.35□□□□□ -1.87
SDC1P18827 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SDC1P18827 FRG1CP-201ENST00000358464 769 ntBASIC3.35□□□□□ -1.87
SDC1P18827 MIR30E-201ENST00000362104 92 ntBASIC3.35□□□□□ -1.87
SDC1P18827 RNU1-85P-201ENST00000364127 164 ntBASIC3.35□□□□□ -1.87
SDC1P18827 AP002088.1-201ENST00000382740 395 ntBASIC3.35□□□□□ -1.87
SDC1P18827 RNU6-224P-201ENST00000384055 107 ntBASIC3.35□□□□□ -1.87
SDC1P18827 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.35□□□□□ -1.87
SDC1P18827 AL133264.1-201ENST00000407157 562 ntBASIC3.35□□□□□ -1.87
SDC1P18827 RNU6-55P-201ENST00000411092 107 ntBASIC3.35□□□□□ -1.87
SDC1P18827 RNU6-954P-201ENST00000411355 107 ntBASIC3.35□□□□□ -1.87
SDC1P18827 ATP5A1P2-201ENST00000412323 255 ntBASIC3.35□□□□□ -1.87
SDC1P18827 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.35□□□□□ -1.87
SDC1P18827 AL136133.1-201ENST00000413694 376 ntBASIC3.35□□□□□ -1.87
SDC1P18827 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.35□□□□□ -1.87
SDC1P18827 RAC1P8-201ENST00000427086 527 ntBASIC3.35□□□□□ -1.87
SDC1P18827 CKS1BP5-201ENST00000434172 273 ntBASIC3.35□□□□□ -1.87
SDC1P18827 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.35□□□□□ -1.87
SDC1P18827 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC3.35□□□□□ -1.87
SDC1P18827 RPL23AP33-201ENST00000442301 452 ntBASIC3.35□□□□□ -1.87
SDC1P18827 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SDC1P18827 RPS3AP46-201ENST00000448352 682 ntBASIC3.35□□□□□ -1.87
SDC1P18827 PPIAP3-201ENST00000450588 505 ntBASIC3.35□□□□□ -1.87
SDC1P18827 AC104164.3-201ENST00000467363 1258 ntBASIC3.35□□□□□ -1.87
SDC1P18827 AC023598.1-201ENST00000472521 361 ntBASIC3.35□□□□□ -1.87
SDC1P18827 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SDC1P18827 AC113420.1-201ENST00000507903 571 ntBASIC3.35□□□□□ -1.87
SDC1P18827 PTGES3P3-201ENST00000511479 482 ntBASIC3.35□□□□□ -1.87
SDC1P18827 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.35□□□□□ -1.87
SDC1P18827 AC104057.1-201ENST00000515547 497 ntBASIC3.35□□□□□ -1.87
SDC1P18827 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.35□□□□□ -1.87
SDC1P18827 AC021451.1-201ENST00000523498 1129 ntBASIC3.35□□□□□ -1.87
SDC1P18827 LRRC6P1-201ENST00000532188 885 ntBASIC3.35□□□□□ -1.87
SDC1P18827 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.35□□□□□ -1.87
SDC1P18827 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.35□□□□□ -1.87
SDC1P18827 CENPUP2-201ENST00000555897 1186 ntBASIC3.35□□□□□ -1.87
SDC1P18827 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC3.35□□□□□ -1.87
SDC1P18827 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.35□□□□□ -1.87
SDC1P18827 AC009237.15-201ENST00000610252 501 ntBASIC3.35□□□□□ -1.87
SDC1P18827 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC3.35□□□□□ -1.87
SDC1P18827 AC123767.1-202ENST00000620407 817 ntBASIC3.35□□□□□ -1.87
SDC1P18827 AC068724.3-201ENST00000625906 87 ntBASIC3.35□□□□□ -1.87
SDC1P18827 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.35□□□□□ -1.87
SDC1P18827 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC3.35□□□□□ -1.87
SDC1P18827 MFSD8-245ENST00000641743 948 ntBASIC3.35□□□□□ -1.87
SDC1P18827 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.35□□□□□ -1.87
SDC1P18827 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
SDC1P18827 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
SDC1P18827 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
SDC1P18827 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SDC1P18827 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
SDC1P18827 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.35□□□□□ -1.87
SDC1P18827 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.35□□□□□ -1.87
SDC1P18827 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.34□□□□□ -1.87
SDC1P18827 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
SDC1P18827 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SDC1P18827 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
SDC1P18827 AL359893.1-201ENST00000447628 1580 ntBASIC3.34□□□□□ -1.87
SDC1P18827 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SDC1P18827 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
SDC1P18827 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
SDC1P18827 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
SDC1P18827 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
SDC1P18827 RNU6-356P-201ENST00000384140 107 ntBASIC3.34□□□□□ -1.87
SDC1P18827 MIR649-201ENST00000384843 97 ntBASIC3.34□□□□□ -1.87
SDC1P18827 TMSB4XP8-201ENST00000402089 135 ntBASIC3.34□□□□□ -1.87
SDC1P18827 SSXP10-201ENST00000402595 565 ntBASIC3.34□□□□□ -1.87
SDC1P18827 AL121978.1-201ENST00000402778 359 ntBASIC3.34□□□□□ -1.87
SDC1P18827 RN7SKP285-201ENST00000410137 318 ntBASIC3.34□□□□□ -1.87
SDC1P18827 RPL31P2-201ENST00000413849 377 ntBASIC3.34□□□□□ -1.87
SDC1P18827 TMSB4XP6-201ENST00000415187 135 ntBASIC3.34□□□□□ -1.87
SDC1P18827 AC092832.1-201ENST00000422934 400 ntBASIC3.34□□□□□ -1.87
SDC1P18827 TMSB4XP1-201ENST00000424567 135 ntBASIC3.34□□□□□ -1.87
SDC1P18827 AC096632.1-201ENST00000427395 310 ntBASIC3.34□□□□□ -1.87
SDC1P18827 RPL31P54-201ENST00000429803 370 ntBASIC3.34□□□□□ -1.87
SDC1P18827 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.34□□□□□ -1.87
SDC1P18827 AC005345.1-201ENST00000431868 217 ntBASIC3.34□□□□□ -1.87
SDC1P18827 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC1P18827 RPS4XP2-201ENST00000458402 793 ntBASIC3.34□□□□□ -1.87
SDC1P18827 snoU109.3-201ENST00000459477 145 ntBASIC3.34□□□□□ -1.87
SDC1P18827 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.34□□□□□ -1.87
SDC1P18827 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC1P18827 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.34□□□□□ -1.87
SDC1P18827 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
SDC1P18827 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.34□□□□□ -1.87
SDC1P18827 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.34□□□□□ -1.87
SDC1P18827 RNU4-60P-201ENST00000517239 135 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms