Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 HYDIN-215ENST00000541601 3058 ntAPPRIS ALT2 TSL 2 BASIC6.52□□□□□ -1.37
HLA-CQ95604 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.52□□□□□ -1.37
HLA-CQ95604 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
HLA-CQ95604 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
HLA-CQ95604 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
HLA-CQ95604 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HLA-CQ95604 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
HLA-CQ95604 AL034546.1-201ENST00000623740 3693 ntBASIC6.52□□□□□ -1.37
HLA-CQ95604 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
HLA-CQ95604 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 SCN1A-204ENST00000423058 8191 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 LARS-212ENST00000510191 3737 ntTSL 2 BASIC6.51□□□□□ -1.37
HLA-CQ95604 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
HLA-CQ95604 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.51□□□□□ -1.37
HLA-CQ95604 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC6.51□□□□□ -1.37
HLA-CQ95604 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
HLA-CQ95604 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 RNU6-596P-201ENST00000365395 98 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 CRP-204ENST00000368112 787 ntTSL 2 BASIC6.51□□□□□ -1.37
HLA-CQ95604 RNU6-171P-201ENST00000384354 107 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
HLA-CQ95604 AL133270.1-201ENST00000402635 279 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 AL355375.1-201ENST00000405686 392 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 AL138885.1-201ENST00000405921 675 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 MIR548H3-201ENST00000408771 118 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 RN7SKP126-201ENST00000411143 300 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 RNU2-71P-201ENST00000411395 189 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC6.51□□□□□ -1.37
HLA-CQ95604 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC6.51□□□□□ -1.37
HLA-CQ95604 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC6.51□□□□□ -1.37
HLA-CQ95604 AL445928.1-201ENST00000435545 222 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 AC243772.1-201ENST00000451620 410 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 MTCO3P8-201ENST00000453691 755 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC6.51□□□□□ -1.37
HLA-CQ95604 RN7SL329P-201ENST00000467740 299 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 RPL31P60-201ENST00000478450 367 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 AC108860.1-201ENST00000484521 383 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC6.51□□□□□ -1.37
HLA-CQ95604 AC010343.2-201ENST00000510162 224 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 RNA5SP400-201ENST00000517155 111 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC6.51□□□□□ -1.37
HLA-CQ95604 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC6.51□□□□□ -1.37
HLA-CQ95604 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.51□□□□□ -1.37
HLA-CQ95604 PSMA6P4-201ENST00000603247 718 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 HMGB1P50-201ENST00000605814 607 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC6.51□□□□□ -1.37
HLA-CQ95604 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC6.51□□□□□ -1.37
HLA-CQ95604 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC6.51□□□□□ -1.37
HLA-CQ95604 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.51□□□□□ -1.37
HLA-CQ95604 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
HLA-CQ95604 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.51□□□□□ -1.37
HLA-CQ95604 AC107980.1-201ENST00000558671 3355 ntBASIC6.51□□□□□ -1.37
HLA-CQ95604 AC108751.5-201ENST00000492880 1336 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.5□□□□□ -1.37
HLA-CQ95604 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
HLA-CQ95604 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HLA-CQ95604 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HLA-CQ95604 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HLA-CQ95604 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HLA-CQ95604 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
HLA-CQ95604 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
HLA-CQ95604 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HLA-CQ95604 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HLA-CQ95604 APP-206ENST00000359726 3294 ntTSL 2 BASIC6.5□□□□□ -1.37
HLA-CQ95604 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
HLA-CQ95604 MTND5P6-201ENST00000422338 1798 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
HLA-CQ95604 RNA5SP46-201ENST00000362370 120 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 RNU1-49P-201ENST00000363468 159 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 RNU4-50P-201ENST00000364361 141 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 RNU6-715P-201ENST00000365204 103 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 RNU6-842P-201ENST00000384269 107 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 MIR92A2-201ENST00000385299 75 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 AC110754.1-201ENST00000399740 601 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 MIR548I2-201ENST00000408348 149 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
HLA-CQ95604 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.5□□□□□ -1.37
HLA-CQ95604 RPL23AP33-201ENST00000442301 452 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC6.5□□□□□ -1.37
HLA-CQ95604 AC084198.1-201ENST00000477747 402 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 AP001086.1-201ENST00000494882 321 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 SNORA40.15-201ENST00000516884 107 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 RNU7-4P-201ENST00000516961 62 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 Y_RNA.710-201ENST00000516975 110 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 AC090151.1-201ENST00000520784 730 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC6.5□□□□□ -1.37
HLA-CQ95604 AC063949.1-201ENST00000552900 865 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 AC009779.6-201ENST00000603972 165 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 AL136131.3-201ENST00000607600 188 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 AL354718.1-201ENST00000619764 589 ntBASIC6.5□□□□□ -1.37
HLA-CQ95604 Z99129.4-201ENST00000624649 2435 ntBASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms