Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 RPS27AP13-201ENST00000498403 237 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AC090281.1-201ENST00000523019 276 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AP001636.2-201ENST00000525517 696 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 OR4A45P-201ENST00000529954 901 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 PTP4A1P6-201ENST00000531034 478 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AC105233.3-201ENST00000531125 744 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 VBP1-203ENST00000535916 944 ntTSL 2 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 HSPE1P5-201ENST00000561489 272 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 MIR5685-201ENST00000579080 79 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AL139344.1-201ENST00000605228 195 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AC245297.2-201ENST00000610119 565 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AC000123.2-201ENST00000623124 461 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 RLIMP1-201ENST00000339626 1680 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 SGO1P2-201ENST00000429458 1589 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC125257.1-201ENST00000560400 2930 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC008033.1-201ENST00000216407 1162 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 MIR331-201ENST00000362302 94 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 RNA5SP124-201ENST00000362739 110 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 SNORA73.2-201ENST00000364946 201 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 SNORA51.6-201ENST00000384151 125 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 RNU6-1122P-201ENST00000384449 107 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 MIR708-201ENST00000390708 88 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 SDHCP2-201ENST00000398565 501 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AL356131.1-201ENST00000405826 414 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC068533.1-201ENST00000418542 415 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 MTCYBP34-201ENST00000439552 670 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AL606662.1-201ENST00000445763 553 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 RPL26P28-201ENST00000451325 435 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 RPL37P6-202ENST00000464216 403 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 RPS3AP22-201ENST00000488297 769 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 PPBPP1-201ENST00000510807 373 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 HNRNPKP5-201ENST00000515300 253 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 RN7SKP277-201ENST00000516895 283 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 OR5AK1P-201ENST00000524837 922 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC100770.1-201ENST00000532310 322 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 MIR4999-201ENST00000585029 91 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AL353778.1-201ENST00000603149 408 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC018638.7-201ENST00000605836 1114 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC008083.4-201ENST00000615076 444 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC092650.2-201ENST00000619984 902 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC130650.2-201ENST00000618736 2403 ntBASIC4.17□□□□□ -1.74
COL28A1Q2UY09 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL28A1Q2UY09 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.16□□□□□ -1.74
COL28A1Q2UY09 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms