Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC5.36□□□□□ -1.55
COL6A1P12109 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A1P12109 AC105129.1-201ENST00000560250 297 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC091489.2-201ENST00000566263 604 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A1P12109 AC018695.5-201ENST00000605872 315 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.36□□□□□ -1.55
COL6A1P12109 AC103710.1-201ENST00000610003 901 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC131902.3-201ENST00000611767 581 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC027807.2-201ENST00000616099 408 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC019206.1-201ENST00000621938 425 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC034229.5-201ENST00000624258 185 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC124864.2-201ENST00000624736 186 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 MTND1P37-201ENST00000636562 264 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.36□□□□□ -1.55
COL6A1P12109 DCAF13P1-201ENST00000495256 1330 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
COL6A1P12109 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
COL6A1P12109 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A1P12109 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 AC025574.1-201ENST00000554784 1653 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A1P12109 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.36□□□□□ -1.55
COL6A1P12109 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
COL6A1P12109 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A1P12109 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A1P12109 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A1P12109 AL031985.3-201ENST00000565390 2449 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A1P12109 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A1P12109 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A1P12109 MTND4P12-201ENST00000498999 1377 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A1P12109 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.35□□□□□ -1.55
COL6A1P12109 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL6A1P12109 RNU6-492P-201ENST00000363035 104 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 Y_RNA.813-201ENST00000364639 102 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL6A1P12109 AL590002.1-201ENST00000406554 418 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 RNU6-248P-201ENST00000410720 107 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 GPS2P1-201ENST00000411761 986 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AC109780.2-201ENST00000413467 845 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 HMGB1P11-201ENST00000413899 637 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A1P12109 MTCO3P1-205ENST00000422088 832 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 RPS27AP14-201ENST00000422868 454 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 RAB11AP1-201ENST00000442978 646 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 GDI2P2-201ENST00000445131 608 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 TPT1P14-201ENST00000448018 505 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AP000542.1-201ENST00000448473 371 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A1P12109 RPL23AP24-201ENST00000458203 385 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 RPS17P2-201ENST00000461663 408 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
COL6A1P12109 AC016559.2-201ENST00000510759 359 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A1P12109 AC007016.1-201ENST00000512110 244 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AP001781.1-201ENST00000530977 207 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 SLC2A13P1-201ENST00000531560 322 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.35□□□□□ -1.55
COL6A1P12109 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A1P12109 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC5.35□□□□□ -1.55
COL6A1P12109 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.35□□□□□ -1.55
COL6A1P12109 AC136618.2-201ENST00000575091 400 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 MIR4429-201ENST00000580105 73 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 HMGB2P1-201ENST00000591146 634 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.35□□□□□ -1.55
COL6A1P12109 AL390208.1-201ENST00000605885 644 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC5.35□□□□□ -1.55
COL6A1P12109 AL049794.2-201ENST00000616301 365 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AC108479.2-201ENST00000617314 601 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AL022401.1-201ENST00000619498 108 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AC012150.2-201ENST00000621300 544 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AC004009.2-201ENST00000623016 728 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 AP005264.7-201ENST00000625003 745 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 FAM157B-203ENST00000639350 358 ntBASIC5.35□□□□□ -1.55
COL6A1P12109 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A1P12109 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A1P12109 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A1P12109 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A1P12109 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A1P12109 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
COL6A1P12109 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A1P12109 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
COL6A1P12109 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A1P12109 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A1P12109 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A1P12109 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A1P12109 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A1P12109 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A1P12109 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC5.34□□□□□ -1.55
COL6A1P12109 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A1P12109 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.34□□□□□ -1.55
COL6A1P12109 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms