Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.84□□□□□ -1.95
TNFP01375 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
TNFP01375 SRP72P2-201ENST00000344851 1979 ntBASIC2.83□□□□□ -1.96
TNFP01375 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.83□□□□□ -1.96
TNFP01375 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
TNFP01375 SNORA18.3-201ENST00000384122 132 ntBASIC2.83□□□□□ -1.96
TNFP01375 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.83□□□□□ -1.96
TNFP01375 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.83□□□□□ -1.96
TNFP01375 AL139281.1-201ENST00000422120 335 ntBASIC2.83□□□□□ -1.96
TNFP01375 NPM1P24-201ENST00000428039 894 ntBASIC2.83□□□□□ -1.96
TNFP01375 AL513175.1-201ENST00000431492 780 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.83□□□□□ -1.96
TNFP01375 B3GNT2P1-201ENST00000434960 952 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC105272.1-201ENST00000438604 198 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.83□□□□□ -1.96
TNFP01375 RPS20P32-201ENST00000456044 356 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC010683.1-201ENST00000473673 378 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.83□□□□□ -1.96
TNFP01375 RNA5SP356-201ENST00000515972 94 ntBASIC2.83□□□□□ -1.96
TNFP01375 OR5D17P-201ENST00000531492 978 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.83□□□□□ -1.96
TNFP01375 ZNF192P1-203ENST00000565888 810 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC138761.3-201ENST00000579993 334 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC2.83□□□□□ -1.96
TNFP01375 AC024153.1-201ENST00000603103 365 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC010680.4-201ENST00000605334 543 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC107294.3-201ENST00000609211 526 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC245100.7-201ENST00000609678 442 ntBASIC2.83□□□□□ -1.96
TNFP01375 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.83□□□□□ -1.96
TNFP01375 MIR4278-201ENST00000636094 69 ntBASIC2.83□□□□□ -1.96
TNFP01375 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
TNFP01375 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.83□□□□□ -1.96
TNFP01375 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC2.83□□□□□ -1.96
TNFP01375 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.83□□□□□ -1.96
TNFP01375 MTND5P27-201ENST00000428871 1720 ntBASIC2.82□□□□□ -1.96
TNFP01375 SNORA46-201ENST00000384762 135 ntBASIC2.82□□□□□ -1.96
TNFP01375 U3.42-201ENST00000408746 214 ntBASIC2.82□□□□□ -1.96
TNFP01375 MIR1289-1-201ENST00000408836 144 ntBASIC2.82□□□□□ -1.96
TNFP01375 RPL7P8-201ENST00000411964 730 ntBASIC2.82□□□□□ -1.96
TNFP01375 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFP01375 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC2.82□□□□□ -1.96
TNFP01375 AC125238.1-201ENST00000448842 249 ntBASIC2.82□□□□□ -1.96
TNFP01375 RPL37P4-201ENST00000448908 268 ntBASIC2.82□□□□□ -1.96
TNFP01375 NIPA2P5-201ENST00000452282 464 ntBASIC2.82□□□□□ -1.96
TNFP01375 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.82□□□□□ -1.96
TNFP01375 HMGB3P30-201ENST00000457863 606 ntBASIC2.82□□□□□ -1.96
TNFP01375 UBE2DNL-203ENST00000474922 222 ntBASIC2.82□□□□□ -1.96
TNFP01375 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
TNFP01375 HMGB1P3-201ENST00000502802 616 ntBASIC2.82□□□□□ -1.96
TNFP01375 AC024224.1-201ENST00000538284 609 ntBASIC2.82□□□□□ -1.96
TNFP01375 TRAV37-201ENST00000553906 342 ntBASIC2.82□□□□□ -1.96
TNFP01375 AC034105.3-201ENST00000565294 442 ntBASIC2.82□□□□□ -1.96
TNFP01375 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC2.82□□□□□ -1.96
TNFP01375 AC006270.2-201ENST00000578523 652 ntBASIC2.82□□□□□ -1.96
TNFP01375 FAM35BP-202ENST00000497389 3337 ntBASIC2.82□□□□□ -1.96
TNFP01375 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
TNFP01375 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.82□□□□□ -1.96
TNFP01375 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.81□□□□□ -1.96
TNFP01375 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
TNFP01375 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
TNFP01375 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.81□□□□□ -1.96
TNFP01375 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
TNFP01375 RNU6-304P-201ENST00000364855 107 ntBASIC2.81□□□□□ -1.96
TNFP01375 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
TNFP01375 AC004987.3-201ENST00000413879 771 ntBASIC2.81□□□□□ -1.96
TNFP01375 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.81□□□□□ -1.96
TNFP01375 GTF2IP23-201ENST00000423746 351 ntBASIC2.81□□□□□ -1.96
TNFP01375 RPL23AP4-201ENST00000427757 463 ntBASIC2.81□□□□□ -1.96
TNFP01375 RPL29P29-201ENST00000448725 423 ntBASIC2.81□□□□□ -1.96
TNFP01375 UQCRHP3-201ENST00000451503 251 ntBASIC2.81□□□□□ -1.96
TNFP01375 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.81□□□□□ -1.96
TNFP01375 RPS17P11-201ENST00000474297 293 ntBASIC2.81□□□□□ -1.96
TNFP01375 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
TNFP01375 RNA5SP380-201ENST00000517190 98 ntBASIC2.81□□□□□ -1.96
TNFP01375 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC2.81□□□□□ -1.96
TNFP01375 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
TNFP01375 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.81□□□□□ -1.96
TNFP01375 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC2.81□□□□□ -1.96
TNFP01375 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.81□□□□□ -1.96
TNFP01375 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
TNFP01375 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.81□□□□□ -1.96
TNFP01375 AP001180.3-201ENST00000582221 145 ntBASIC2.81□□□□□ -1.96
TNFP01375 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC2.81□□□□□ -1.96
TNFP01375 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC2.81□□□□□ -1.96
TNFP01375 OR2AS2P-201ENST00000606902 342 ntBASIC2.81□□□□□ -1.96
TNFP01375 AC009039.2-201ENST00000624524 529 ntBASIC2.81□□□□□ -1.96
TNFP01375 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.81□□□□□ -1.96
TNFP01375 AC119674.1-212ENST00000641155 993 ntBASIC2.81□□□□□ -1.96
TNFP01375 AC017002.4-201ENST00000604721 1525 ntBASIC2.81□□□□□ -1.96
TNFP01375 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.81□□□□□ -1.96
TNFP01375 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.81□□□□□ -1.96
TNFP01375 AC005183.1-201ENST00000603687 1979 ntBASIC2.81□□□□□ -1.96
TNFP01375 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.81□□□□□ -1.96
TNFP01375 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.8□□□□□ -1.96
TNFP01375 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.8□□□□□ -1.96
TNFP01375 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
TNFP01375 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.8□□□□□ -1.96
TNFP01375 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.8□□□□□ -1.96
TNFP01375 SNORA48.8-201ENST00000391324 134 ntBASIC2.8□□□□□ -1.96
TNFP01375 HMGB3P23-201ENST00000414981 585 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms