Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 TEK-204ENST00000519097 3836 ntTSL 2 BASIC10.12□□□□□ -0.79
MSH5O43196 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC10.12□□□□□ -0.79
MSH5O43196 CYFIP2-221ENST00000618329 4256 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
MSH5O43196 EFCAB6-203ENST00000396231 4424 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
MSH5O43196 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC10.12□□□□□ -0.79
MSH5O43196 PRLR-202ENST00000310101 1297 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
MSH5O43196 RNU6-508P-201ENST00000363231 103 ntBASIC10.12□□□□□ -0.79
MSH5O43196 PGAM1P3-201ENST00000420790 565 ntBASIC10.12□□□□□ -0.79
MSH5O43196 LDAH-208ENST00000435420 3837 ntTSL 2 BASIC10.12□□□□□ -0.79
MSH5O43196 AL500522.2-201ENST00000448562 343 ntBASIC10.12□□□□□ -0.79
MSH5O43196 AL133445.1-201ENST00000467051 452 ntBASIC10.12□□□□□ -0.79
MSH5O43196 RN7SL335P-201ENST00000482790 304 ntBASIC10.12□□□□□ -0.79
MSH5O43196 RPL23AP75-201ENST00000491601 451 ntBASIC10.12□□□□□ -0.79
MSH5O43196 RNU6-390P-201ENST00000516259 103 ntBASIC10.12□□□□□ -0.79
MSH5O43196 MIR892C-201ENST00000516410 77 ntBASIC10.12□□□□□ -0.79
MSH5O43196 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC10.12□□□□□ -0.79
MSH5O43196 AC092868.1-201ENST00000557949 802 ntBASIC10.12□□□□□ -0.79
MSH5O43196 RPL23AP77-201ENST00000588044 463 ntBASIC10.12□□□□□ -0.79
MSH5O43196 RPL30P11-203ENST00000598995 310 ntBASIC10.12□□□□□ -0.79
MSH5O43196 SSX9-202ENST00000608568 580 ntTSL 4 BASIC10.12□□□□□ -0.79
MSH5O43196 MIR6070-201ENST00000613967 103 ntBASIC10.12□□□□□ -0.79
MSH5O43196 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
MSH5O43196 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
MSH5O43196 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
MSH5O43196 NR2F1-AS1-208ENST00000606233 2264 ntTSL 2 BASIC10.12□□□□□ -0.79
MSH5O43196 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
MSH5O43196 LINC00299-201ENST00000430192 1760 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
MSH5O43196 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
MSH5O43196 ERG-205ENST00000398910 4954 ntTSL 5 BASIC10.11□□□□□ -0.79
MSH5O43196 CLSPN-201ENST00000251195 4769 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
MSH5O43196 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
MSH5O43196 BRCA1-208ENST00000468300 3273 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
MSH5O43196 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
MSH5O43196 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
MSH5O43196 ARMCX7P-201ENST00000372828 562 ntBASIC10.11□□□□□ -0.79
MSH5O43196 SNORA26.5-201ENST00000391215 123 ntBASIC10.11□□□□□ -0.79
MSH5O43196 SNORA11.3-201ENST00000408471 128 ntBASIC10.11□□□□□ -0.79
MSH5O43196 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC10.11□□□□□ -0.79
MSH5O43196 AC008496.2-201ENST00000421252 460 ntTSL 3 BASIC10.11□□□□□ -0.79
MSH5O43196 FAM96B-201ENST00000422424 676 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
MSH5O43196 RPLP0P1-201ENST00000457002 361 ntBASIC10.11□□□□□ -0.79
MSH5O43196 RN7SKP122-201ENST00000515923 296 ntBASIC10.11□□□□□ -0.79
MSH5O43196 IGHV7-40-201ENST00000520963 296 ntBASIC10.11□□□□□ -0.79
MSH5O43196 AC130365.2-201ENST00000525882 1201 ntBASIC10.11□□□□□ -0.79
MSH5O43196 AC130366.1-201ENST00000526505 1192 ntBASIC10.11□□□□□ -0.79
MSH5O43196 OR4H12P-201ENST00000556269 907 ntBASIC10.11□□□□□ -0.79
MSH5O43196 RPS28P1-201ENST00000604589 187 ntBASIC10.11□□□□□ -0.79
MSH5O43196 RN7SL715P-201ENST00000606972 286 ntBASIC10.11□□□□□ -0.79
MSH5O43196 TUG1_3.1-201ENST00000616187 237 ntBASIC10.11□□□□□ -0.79
MSH5O43196 SNORA11.6-201ENST00000619030 128 ntBASIC10.11□□□□□ -0.79
MSH5O43196 ZNF37A-202ENST00000361085 8738 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
MSH5O43196 PRDM2-203ENST00000343137 5797 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
MSH5O43196 ANLN-201ENST00000265748 4787 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
MSH5O43196 RNF219-201ENST00000282003 3529 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
MSH5O43196 SVEP1-202ENST00000374469 12194 ntAPPRIS P2 TSL 5 BASIC10.1□□□□□ -0.79
MSH5O43196 TLR10-204ENST00000506111 3462 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
MSH5O43196 HEPH-201ENST00000336279 4228 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 HRH1-201ENST00000397056 4711 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC10.1□□□□□ -0.79
MSH5O43196 EZH2-203ENST00000460911 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 NUP210L-202ENST00000368553 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 OR51A10P-201ENST00000307165 937 ntBASIC10.1□□□□□ -0.79
MSH5O43196 SNORA30-201ENST00000384028 129 ntBASIC10.1□□□□□ -0.79
MSH5O43196 RNU6-281P-201ENST00000384212 103 ntBASIC10.1□□□□□ -0.79
MSH5O43196 RPL26P27-201ENST00000414397 437 ntBASIC10.1□□□□□ -0.79
MSH5O43196 PPIAP23-201ENST00000420099 497 ntBASIC10.1□□□□□ -0.79
MSH5O43196 AC003071.2-201ENST00000423857 315 ntBASIC10.1□□□□□ -0.79
MSH5O43196 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC10.1□□□□□ -0.79
MSH5O43196 RPL36AP39-201ENST00000445859 318 ntBASIC10.1□□□□□ -0.79
MSH5O43196 OR7E62P-201ENST00000456741 477 ntBASIC10.1□□□□□ -0.79
MSH5O43196 RN7SL741P-201ENST00000482473 289 ntBASIC10.1□□□□□ -0.79
MSH5O43196 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC10.1□□□□□ -0.79
MSH5O43196 WBP1LP3-201ENST00000523033 208 ntBASIC10.1□□□□□ -0.79
MSH5O43196 MED28P6-201ENST00000558776 231 ntBASIC10.1□□□□□ -0.79
MSH5O43196 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC10.1□□□□□ -0.79
MSH5O43196 AC087565.1-201ENST00000565061 391 ntTSL 5 BASIC10.1□□□□□ -0.79
MSH5O43196 RN7SL366P-201ENST00000577957 292 ntBASIC10.1□□□□□ -0.79
MSH5O43196 AC105254.2-201ENST00000603636 436 ntBASIC10.1□□□□□ -0.79
MSH5O43196 AL021918.1-201ENST00000603933 236 ntBASIC10.1□□□□□ -0.79
MSH5O43196 PTBP3-204ENST00000374255 3413 ntAPPRIS P3 TSL 5 BASIC10.1□□□□□ -0.79
MSH5O43196 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 AC096564.2-201ENST00000512428 3147 ntTSL 5 BASIC10.1□□□□□ -0.79
MSH5O43196 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC10.1□□□□□ -0.79
MSH5O43196 VPS36-201ENST00000378060 4417 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
MSH5O43196 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC10.1□□□□□ -0.79
MSH5O43196 OAS2-207ENST00000620097 2908 ntAPPRIS ALT2 TSL 5 BASIC10.1□□□□□ -0.79
MSH5O43196 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 AL133243.4-201ENST00000623116 3109 ntBASIC10.09□□□□□ -0.79
MSH5O43196 RBBP5-201ENST00000264515 4404 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 ZNF844-202ENST00000441304 2036 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC10.09□□□□□ -0.79
MSH5O43196 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 319.3 ms