Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 KCTD9P2-201ENST00000512203 1013 ntBASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 MTCYBP20-201ENST00000524239 1129 ntBASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 MAL2-203ENST00000534619 578 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 CYCSP40-201ENST00000575927 294 ntBASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 HMGB2P1-201ENST00000591146 634 ntBASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 RNF138P2-201ENST00000603490 592 ntBASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 AC006329.2-201ENST00000611491 394 ntBASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 AC083809.1-201ENST00000615051 472 ntBASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 AC009509.4-201ENST00000619202 509 ntBASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC144BQ3MJ40 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 SNORD51-201ENST00000384320 80 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 RNU6-821P-201ENST00000390995 107 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 IGKV1OR9-1-201ENST00000424370 284 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 NRBF2P3-201ENST00000432731 865 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 MTND1P34-201ENST00000438556 671 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AL445433.1-201ENST00000457507 257 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 snoU13.1-201ENST00000459157 104 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 RPS4XP10-201ENST00000465034 731 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AC108064.1-201ENST00000513791 460 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AP002453.2-201ENST00000533503 320 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 EEF1B2P4-201ENST00000551398 348 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 TVP23CP2-201ENST00000571473 623 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 MIR5096-201ENST00000583713 70 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 MIR548AB-201ENST00000584917 84 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 RNA5SP108-201ENST00000605921 117 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AC091965.4-201ENST00000607691 587 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 AC019193.2-201ENST00000610012 634 ntBASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.59□□□□□ -1.51
CCDC144BQ3MJ40 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.52
CCDC144BQ3MJ40 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
CCDC144BQ3MJ40 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 AP002001.2-201ENST00000529025 1469 ntBASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 AC027287.1-201ENST00000553115 1453 ntBASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 AC010928.1-201ENST00000592477 1447 ntBASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 RNU6-359P-201ENST00000365466 108 ntBASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 RNU6-533P-201ENST00000384144 107 ntBASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 RNU6-1042P-201ENST00000384204 107 ntBASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 Y_RNA.493-201ENST00000384422 102 ntBASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 RNU2-16P-201ENST00000410712 136 ntBASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 CKS1BP6-201ENST00000424932 240 ntBASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 AC006548.1-201ENST00000427470 102 ntBASIC5.58□□□□□ -1.52
CCDC144BQ3MJ40 COX6CP13-201ENST00000428703 226 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms