Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RPL7P23-201ENST00000493874 747 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA1P55317 AC010265.1-201ENST00000513509 211 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA1P55317 RNU6-751P-201ENST00000516382 101 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 DUXAP2-201ENST00000519198 589 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA1P55317 AC008083.2-201ENST00000546707 476 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC2.9□□□□□ -1.95
FOXA1P55317 AC055876.1-202ENST00000567053 138 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA1P55317 MIR4458-201ENST00000578872 75 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA1P55317 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA1P55317 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA1P55317 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC2.9□□□□□ -1.95
FOXA1P55317 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA1P55317 MIR8058-201ENST00000615737 89 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 AC012314.7-201ENST00000619693 93 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 LINC00216-201ENST00000623548 1126 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC2.9□□□□□ -1.95
FOXA1P55317 MIR622-201ENST00000638396 96 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 AL359715.4-201ENST00000606629 1436 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 AL353746.1-201ENST00000566293 6881 ntBASIC2.9□□□□□ -1.95
FOXA1P55317 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.9□□□□□ -1.95
FOXA1P55317 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
FOXA1P55317 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.9□□□□□ -1.95
FOXA1P55317 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA1P55317 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA1P55317 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC2.89□□□□□ -1.95
FOXA1P55317 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA1P55317 AL118496.1-201ENST00000440201 1812 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA1P55317 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC2.89□□□□□ -1.95
FOXA1P55317 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA1P55317 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA1P55317 RPL31P52-201ENST00000407532 367 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 RNU4-47P-201ENST00000410876 114 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 RNA5SP498-201ENST00000411342 120 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA1P55317 AL353678.1-201ENST00000422735 741 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 RPL23AP69-201ENST00000431134 458 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC2.89□□□□□ -1.95
FOXA1P55317 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.89□□□□□ -1.95
FOXA1P55317 AC117440.1-201ENST00000474107 571 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA1P55317 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA1P55317 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA1P55317 AC010285.3-201ENST00000511668 676 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 OR4A2P-201ENST00000527276 913 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC2.89□□□□□ -1.95
FOXA1P55317 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
FOXA1P55317 AC023158.1-201ENST00000561632 1025 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA1P55317 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC2.89□□□□□ -1.95
FOXA1P55317 MIR4512-201ENST00000583257 77 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 AC017100.2-201ENST00000584628 355 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA1P55317 AC245128.3-201ENST00000594721 748 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 ELOCP35-201ENST00000604289 336 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 AL161756.2-201ENST00000604597 246 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 AC084757.4-201ENST00000616350 526 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA1P55317 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA1P55317 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA1P55317 AL079305.1-201ENST00000623159 3008 ntBASIC2.89□□□□□ -1.95
FOXA1P55317 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA1P55317 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA1P55317 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.88□□□□□ -1.95
FOXA1P55317 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA1P55317 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.88□□□□□ -1.95
FOXA1P55317 AC025125.1-201ENST00000624743 1922 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC2.88□□□□□ -1.95
FOXA1P55317 MIR22-201ENST00000362190 85 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 U3.42-201ENST00000408746 214 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC2.88□□□□□ -1.95
FOXA1P55317 NDUFB4P5-201ENST00000415445 361 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 SDCBPP3-201ENST00000419629 891 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AL445528.1-201ENST00000426330 420 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA1P55317 RPL23AP83-201ENST00000434984 473 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AC023512.1-201ENST00000444513 499 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA1P55317 AC092185.1-201ENST00000491371 97 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA1P55317 POU5F1P7-201ENST00000508759 541 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA1P55317 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA1P55317 TRAV37-201ENST00000553906 342 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 MTATP6P25-201ENST00000574491 261 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA1P55317 SRGNP1-201ENST00000603392 451 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AC007179.3-201ENST00000604976 235 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA1P55317 AC016911.1-201ENST00000613297 452 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AL162574.2-201ENST00000614618 657 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 AC139769.3-201ENST00000618383 175 ntBASIC2.88□□□□□ -1.95
FOXA1P55317 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA1P55317 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA1P55317 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms