Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC5.03□□□□□ -1.6
SMARCA1P28370 VDAC1P6-201ENST00000430062 855 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 RPEP2-201ENST00000432149 701 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC5.03□□□□□ -1.6
SMARCA1P28370 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.03□□□□□ -1.6
SMARCA1P28370 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC5.03□□□□□ -1.6
SMARCA1P28370 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC5.03□□□□□ -1.6
SMARCA1P28370 TRGVB-201ENST00000453257 471 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC009963.2-201ENST00000453431 138 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 RPL23AP81-201ENST00000455252 467 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 RN7SL41P-201ENST00000476144 297 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 DEFB109F-201ENST00000491870 277 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC091167.1-201ENST00000492017 396 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 RN7SL691P-201ENST00000494487 301 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC5.03□□□□□ -1.6
SMARCA1P28370 AC083829.1-201ENST00000503756 657 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC004069.2-201ENST00000505438 1114 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AL592156.1-201ENST00000508758 304 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 MTCYBP43-201ENST00000513621 740 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC5.03□□□□□ -1.6
SMARCA1P28370 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC5.03□□□□□ -1.6
SMARCA1P28370 ARL2BPP5-201ENST00000523141 481 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.03□□□□□ -1.6
SMARCA1P28370 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AL352979.3-201ENST00000553515 247 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AL389895.1-201ENST00000554127 252 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 GTF2IP22-201ENST00000554443 182 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC5.03□□□□□ -1.6
SMARCA1P28370 ANKRD36BP2-206ENST00000575193 1245 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC107982.3-201ENST00000584957 985 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC083899.3-201ENST00000603413 594 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AL596327.1-201ENST00000603629 213 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.03□□□□□ -1.6
SMARCA1P28370 AP000254.1-201ENST00000609934 520 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AL158196.1-201ENST00000616786 434 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC026585.1-201ENST00000619582 524 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AC018816.2-201ENST00000621460 353 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 RNU6-156P-201ENST00000621869 107 ntBASIC5.03□□□□□ -1.6
SMARCA1P28370 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.03□□□□□ -1.6
SMARCA1P28370 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC5.03□□□□□ -1.6
SMARCA1P28370 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.03□□□□□ -1.6
SMARCA1P28370 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.03□□□□□ -1.6
SMARCA1P28370 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.03□□□□□ -1.6
SMARCA1P28370 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SMARCA1P28370 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
SMARCA1P28370 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SMARCA1P28370 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SMARCA1P28370 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SMARCA1P28370 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC5.02□□□□□ -1.61
SMARCA1P28370 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
SMARCA1P28370 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
SMARCA1P28370 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
SMARCA1P28370 AL121657.1-201ENST00000327215 531 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SMARCA1P28370 AC097374.1-203ENST00000400783 485 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 RN7SKP142-201ENST00000411236 328 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AC011933.1-201ENST00000413334 321 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 MTCO3P41-201ENST00000414801 328 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.02□□□□□ -1.61
SMARCA1P28370 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC5.02□□□□□ -1.61
SMARCA1P28370 CYCSP46-201ENST00000423569 204 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 CHIAP3-201ENST00000423668 1133 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AC093698.1-201ENST00000423843 571 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC5.02□□□□□ -1.61
SMARCA1P28370 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.02□□□□□ -1.61
SMARCA1P28370 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.02□□□□□ -1.61
SMARCA1P28370 COX6CP2-201ENST00000444980 225 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 EPS15P1-201ENST00000448836 336 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 HMGN3P1-201ENST00000453847 193 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AC116533.1-201ENST00000459748 321 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 RPL7AP28-201ENST00000464513 571 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 RPL35AP15-201ENST00000468042 339 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 RPL35P6-201ENST00000490024 372 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 KLRA1P-201ENST00000503499 986 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AC090071.1-201ENST00000507713 644 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC5.02□□□□□ -1.61
SMARCA1P28370 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.02□□□□□ -1.61
SMARCA1P28370 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC5.02□□□□□ -1.61
SMARCA1P28370 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC5.02□□□□□ -1.61
SMARCA1P28370 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.02□□□□□ -1.61
SMARCA1P28370 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.02□□□□□ -1.61
SMARCA1P28370 DEFB131D-201ENST00000526803 184 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.02□□□□□ -1.61
SMARCA1P28370 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC5.02□□□□□ -1.61
SMARCA1P28370 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.02□□□□□ -1.61
SMARCA1P28370 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC5.02□□□□□ -1.61
SMARCA1P28370 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SMARCA1P28370 HSPE1P14-201ENST00000605812 302 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.02□□□□□ -1.61
SMARCA1P28370 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC5.02□□□□□ -1.61
SMARCA1P28370 FAM27D1-201ENST00000612308 341 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AC114781.5-201ENST00000615297 108 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 MIR6810-201ENST00000622701 70 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AC011944.2-201ENST00000624440 683 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AC084035.1-201ENST00000634543 607 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 AC006927.3-201ENST00000638789 384 ntBASIC5.02□□□□□ -1.61
SMARCA1P28370 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC5.02□□□□□ -1.61
SMARCA1P28370 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
SMARCA1P28370 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SMARCA1P28370 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 144.7 ms