Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 SNORD116-26-201ENST00000516006 96 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 RN7SKP244-201ENST00000516513 307 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 RNU6-314P-201ENST00000516574 104 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.83□□□□□ -1.8
HOXD3P31249 AC022878.1-201ENST00000530684 149 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC068587.4-201ENST00000533893 186 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 BGLT3-201ENST00000564523 994 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 TVP23CP2-201ENST00000571473 623 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXD3P31249 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXD3P31249 AC233280.2-201ENST00000603917 1070 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC112191.3-201ENST00000604371 277 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC090578.1-201ENST00000604955 591 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC091965.4-201ENST00000607691 587 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXD3P31249 MIR6758-201ENST00000620653 63 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 MIR7703-201ENST00000620784 77 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 AC138649.3-201ENST00000622154 254 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HOXD3P31249 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD3P31249 AC104623.2-202ENST00000623477 4002 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD3P31249 SAMMSON-226ENST00000642089 1582 ntBASIC3.83□□□□□ -1.8
HOXD3P31249 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD3P31249 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXD3P31249 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
HOXD3P31249 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
HOXD3P31249 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXD3P31249 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 SDAD1P1-202ENST00000524156 2051 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC099654.2-201ENST00000433031 1980 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 AC091046.3-201ENST00000631455 1574 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 OR11H5P-202ENST00000641612 1325 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HOXD3P31249 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HOXD3P31249 OR4G2P-201ENST00000328113 903 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 RNU5A-6P-201ENST00000384136 116 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 RNU6-1226P-201ENST00000384317 107 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 GLULP6-201ENST00000399502 913 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 RPS3AP3-201ENST00000411933 242 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 HMGN2P27-201ENST00000427352 270 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 RSU1P2-202ENST00000437884 485 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC105402.2-201ENST00000438503 358 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 PGBD4P3-201ENST00000440731 581 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 RBMX2P4-201ENST00000441256 376 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 RPL7P36-201ENST00000444633 681 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC012512.1-201ENST00000446594 718 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC002381.1-201ENST00000447049 280 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC005297.2-201ENST00000450430 606 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXD3P31249 HMGB3P21-201ENST00000452483 547 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC098824.1-201ENST00000453565 980 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 Z82190.1-201ENST00000454534 490 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 OR52A4P-201ENST00000472867 958 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC087879.1-201ENST00000474343 374 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 ACTR3P3-201ENST00000480448 893 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC106872.3-201ENST00000495104 446 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC090453.1-201ENST00000495560 436 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC105252.1-201ENST00000503089 286 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 MYL12BP2-201ENST00000503948 512 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 MRPS33P2-201ENST00000507850 322 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXD3P31249 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 SNORA18.6-201ENST00000516792 115 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.82□□□□□ -1.8
HOXD3P31249 DEFB108A-201ENST00000530110 222 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXD3P31249 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXD3P31249 LSM6P2-201ENST00000552208 177 ntBASIC3.82□□□□□ -1.8
HOXD3P31249 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms