Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC005798.1-201ENST00000513715 387 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 ERHP1-201ENST00000523006 310 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 DEFB108D-201ENST00000527787 222 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC6.74□□□□□ -1.33
COL9A1P20849 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.74□□□□□ -1.33
COL9A1P20849 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC6.74□□□□□ -1.33
COL9A1P20849 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 MIR5701-3-201ENST00000578890 82 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 MIR4701-201ENST00000583094 63 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 MIR5701-1-201ENST00000585138 82 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.74□□□□□ -1.33
COL9A1P20849 AC007619.2-201ENST00000605743 379 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 MIR378J-201ENST00000611988 109 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 MIR5701-2-201ENST00000615634 82 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
COL9A1P20849 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
COL9A1P20849 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
COL9A1P20849 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.74□□□□□ -1.33
COL9A1P20849 DDX18-201ENST00000263239 3796 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.73□□□□□ -1.33
COL9A1P20849 LINC00598-215ENST00000638084 1974 ntTSL 5 BASIC6.73□□□□□ -1.33
COL9A1P20849 CDH2-202ENST00000399380 3737 ntTSL 2 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 AL359396.1-201ENST00000623151 2376 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 ZRANB1-201ENST00000359653 5695 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 Y_RNA.76-201ENST00000362931 109 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 SNORA38B-201ENST00000363524 131 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 Y_RNA.240-201ENST00000364469 95 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 RNU6-708P-201ENST00000384217 107 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 AL591034.2-201ENST00000402839 359 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 AL023284.3-201ENST00000407767 334 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 AC118754.1-201ENST00000416958 370 ntTSL 3 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC6.73□□□□□ -1.33
COL9A1P20849 RPL23AP22-201ENST00000437556 453 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 AP006222.1-205ENST00000450734 457 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 AL445665.1-202ENST00000452436 324 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 RPL37P6-201ENST00000460682 294 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC6.73□□□□□ -1.33
COL9A1P20849 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC074250.1-201ENST00000511117 192 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC6.73□□□□□ -1.33
COL9A1P20849 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC6.73□□□□□ -1.33
COL9A1P20849 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC087575.1-201ENST00000585087 229 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC073488.9-201ENST00000631601 754 ntBASIC6.73□□□□□ -1.33
COL9A1P20849 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC6.73□□□□□ -1.33
COL9A1P20849 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC6.73□□□□□ -1.33
COL9A1P20849 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC6.73□□□□□ -1.33
COL9A1P20849 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC6.73□□□□□ -1.33
COL9A1P20849 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC6.73□□□□□ -1.33
COL9A1P20849 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 CD200R1-202ENST00000308611 2299 ntAPPRIS P4 TSL 1 (best) BASIC6.73□□□□□ -1.33
COL9A1P20849 Z97989.1-201ENST00000531702 2421 ntBASIC6.72□□□□□ -1.33
COL9A1P20849 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL9A1P20849 POTEH-AS1-201ENST00000422014 2566 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL9A1P20849 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC6.72□□□□□ -1.33
COL9A1P20849 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL9A1P20849 TDRD3-209ENST00000621840 2497 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL9A1P20849 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL9A1P20849 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL9A1P20849 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL9A1P20849 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC6.72□□□□□ -1.33
COL9A1P20849 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL9A1P20849 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL9A1P20849 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
COL9A1P20849 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
COL9A1P20849 RNY4P28-201ENST00000365281 93 ntBASIC6.72□□□□□ -1.33
COL9A1P20849 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC6.72□□□□□ -1.33
COL9A1P20849 Y_RNA.541-201ENST00000384640 113 ntBASIC6.72□□□□□ -1.33
COL9A1P20849 SNORA53-201ENST00000391141 249 ntBASIC6.72□□□□□ -1.33
COL9A1P20849 AC244452.1-201ENST00000413798 141 ntBASIC6.72□□□□□ -1.33
COL9A1P20849 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC6.72□□□□□ -1.33
COL9A1P20849 CYP4F32P-201ENST00000426492 504 ntBASIC6.72□□□□□ -1.33
COL9A1P20849 AC073063.1-201ENST00000434352 607 ntBASIC6.72□□□□□ -1.33
COL9A1P20849 AC087477.1-201ENST00000465747 340 ntBASIC6.72□□□□□ -1.33
COL9A1P20849 AC018645.1-201ENST00000505003 109 ntBASIC6.72□□□□□ -1.33
COL9A1P20849 RNA5SP438-201ENST00000516561 112 ntBASIC6.72□□□□□ -1.33
COL9A1P20849 RNU4ATAC10P-201ENST00000516967 122 ntBASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms