Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC6.03□□□□□ -1.44
LIG1P18858 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC6.03□□□□□ -1.44
LIG1P18858 SCARNA16.4-201ENST00000516956 187 ntBASIC6.03□□□□□ -1.44
LIG1P18858 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC6.03□□□□□ -1.44
LIG1P18858 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC6.03□□□□□ -1.44
LIG1P18858 HPRT1P3-201ENST00000539521 576 ntBASIC6.03□□□□□ -1.44
LIG1P18858 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.03□□□□□ -1.44
LIG1P18858 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC6.03□□□□□ -1.44
LIG1P18858 AC090502.2-201ENST00000549267 280 ntBASIC6.03□□□□□ -1.44
LIG1P18858 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC6.03□□□□□ -1.44
LIG1P18858 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC6.03□□□□□ -1.44
LIG1P18858 AC068790.5-201ENST00000602741 355 ntBASIC6.03□□□□□ -1.44
LIG1P18858 AL162431.4-201ENST00000604674 411 ntBASIC6.03□□□□□ -1.44
LIG1P18858 RNU6-87P-201ENST00000607561 108 ntBASIC6.03□□□□□ -1.44
LIG1P18858 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC6.03□□□□□ -1.44
LIG1P18858 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC6.03□□□□□ -1.44
LIG1P18858 AC025574.1-201ENST00000554784 1653 ntBASIC6.03□□□□□ -1.44
LIG1P18858 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC6.03□□□□□ -1.44
LIG1P18858 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC6.03□□□□□ -1.44
LIG1P18858 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC6.03□□□□□ -1.44
LIG1P18858 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
LIG1P18858 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
LIG1P18858 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
LIG1P18858 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC6.03□□□□□ -1.44
LIG1P18858 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC6.02□□□□□ -1.44
LIG1P18858 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
LIG1P18858 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIG1P18858 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIG1P18858 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
LIG1P18858 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIG1P18858 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIG1P18858 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIG1P18858 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC6.02□□□□□ -1.45
LIG1P18858 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
LIG1P18858 Y_RNA.159-201ENST00000363674 87 ntBASIC6.02□□□□□ -1.45
LIG1P18858 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC6.02□□□□□ -1.45
LIG1P18858 HMGB1P17-201ENST00000403495 628 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AL356432.1-201ENST00000405809 419 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC6.02□□□□□ -1.45
LIG1P18858 AC073136.2-201ENST00000417282 849 ntBASIC6.02□□□□□ -1.45
LIG1P18858 RAD23BP1-201ENST00000421404 1227 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC6.02□□□□□ -1.45
LIG1P18858 DYNLL1P7-201ENST00000429273 258 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC6.02□□□□□ -1.45
LIG1P18858 MTCO3P21-201ENST00000430791 643 ntBASIC6.02□□□□□ -1.45
LIG1P18858 ACTR3P2-201ENST00000439585 1257 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC6.02□□□□□ -1.45
LIG1P18858 AC140076.1-201ENST00000449897 361 ntBASIC6.02□□□□□ -1.45
LIG1P18858 RN7SL629P-201ENST00000489622 285 ntBASIC6.02□□□□□ -1.45
LIG1P18858 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC6.02□□□□□ -1.45
LIG1P18858 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.02□□□□□ -1.45
LIG1P18858 AF279873.1-201ENST00000523393 313 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AC093027.1-201ENST00000546698 429 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AC078814.3-201ENST00000553036 491 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AC037471.2-201ENST00000564941 598 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.02□□□□□ -1.45
LIG1P18858 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC6.02□□□□□ -1.45
LIG1P18858 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC6.02□□□□□ -1.45
LIG1P18858 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.02□□□□□ -1.45
LIG1P18858 PSMA6P4-201ENST00000603247 718 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AL445222.1-201ENST00000607259 628 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AL161734.1-201ENST00000609720 557 ntBASIC6.02□□□□□ -1.45
LIG1P18858 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC6.02□□□□□ -1.45
LIG1P18858 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.02□□□□□ -1.45
LIG1P18858 AL732618.1-201ENST00000623251 301 ntBASIC6.02□□□□□ -1.45
LIG1P18858 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
LIG1P18858 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
LIG1P18858 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC6.02□□□□□ -1.45
LIG1P18858 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
LIG1P18858 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC6.02□□□□□ -1.45
LIG1P18858 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
LIG1P18858 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
LIG1P18858 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
LIG1P18858 AC235565.1-201ENST00000456962 1325 ntBASIC6.01□□□□□ -1.45
LIG1P18858 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIG1P18858 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
LIG1P18858 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIG1P18858 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIG1P18858 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
LIG1P18858 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC6.01□□□□□ -1.45
LIG1P18858 AC010928.1-201ENST00000592477 1447 ntBASIC6.01□□□□□ -1.45
LIG1P18858 AC023421.1-201ENST00000590535 1785 ntBASIC6.01□□□□□ -1.45
LIG1P18858 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
LIG1P18858 CCT4P2-201ENST00000233836 1548 ntBASIC6.01□□□□□ -1.45
LIG1P18858 RNU6-282P-201ENST00000365357 103 ntBASIC6.01□□□□□ -1.45
LIG1P18858 RNU2-28P-201ENST00000410457 189 ntBASIC6.01□□□□□ -1.45
LIG1P18858 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG1P18858 AL355433.1-201ENST00000422804 300 ntBASIC6.01□□□□□ -1.45
LIG1P18858 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG1P18858 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG1P18858 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC6.01□□□□□ -1.45
LIG1P18858 RPL22P17-201ENST00000438729 315 ntBASIC6.01□□□□□ -1.45
LIG1P18858 SEPT14P3-201ENST00000439401 183 ntBASIC6.01□□□□□ -1.45
LIG1P18858 HMGB3P9-201ENST00000441799 583 ntBASIC6.01□□□□□ -1.45
LIG1P18858 RPL7AP61-201ENST00000443410 636 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 126.9 ms