Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC114781.3-201ENST00000512083 142 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC016065.2-201ENST00000514530 444 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 RNU6-475P-201ENST00000516073 104 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 RNA5SP438-201ENST00000516561 112 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 RNU6-699P-201ENST00000517081 110 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 IGHV4-55-201ENST00000520889 368 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AP003396.4-201ENST00000527574 265 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AP001858.2-201ENST00000536213 601 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 SNORA70D-201ENST00000578836 135 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC116447.1-201ENST00000613153 453 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 SNHG22-203ENST00000617833 660 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC245014.3-201ENST00000618589 347 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC131009.3-201ENST00000621809 287 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AL596275.2-208ENST00000641192 594 ntBASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
LIMD1Q9UGP4 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 SAGE3P-201ENST00000619800 1635 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 RNU6-238P-201ENST00000363313 106 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 Y_RNA.389-201ENST00000383924 113 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 RNU6-393P-201ENST00000384475 107 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 RPL21P24-201ENST00000413752 448 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 BX284632.2-201ENST00000421091 399 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 RPS12P5-201ENST00000423449 371 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC236972.1-201ENST00000433225 199 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 GAPDHP23-201ENST00000444823 993 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AL359955.2-201ENST00000445380 353 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC068522.1-201ENST00000482895 345 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC063943.2-201ENST00000495697 534 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 Y_RNA.670-201ENST00000516255 105 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AP001922.4-201ENST00000526967 290 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AL591767.3-201ENST00000554632 525 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC018552.1-201ENST00000562099 811 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC092121.1-201ENST00000569452 202 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC005332.4-201ENST00000592752 579 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AC068768.2-201ENST00000602352 343 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 MTCO1P24-201ENST00000515438 1558 ntBASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 LINC02092-201ENST00000455366 2472 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
LIMD1Q9UGP4 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.36
LIMD1Q9UGP4 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC6.59□□□□□ -1.36
LIMD1Q9UGP4 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
LIMD1Q9UGP4 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.59□□□□□ -1.36
LIMD1Q9UGP4 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
LIMD1Q9UGP4 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 IL1RAP-201ENST00000072516 4697 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 PLEKHA1-205ENST00000433307 3704 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AL022323.4-201ENST00000623980 13120 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 OR52B3P-201ENST00000314715 928 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 RNA5SP346-201ENST00000363541 121 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 Y_RNA.152-201ENST00000363578 100 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 Y_RNA.257-201ENST00000364596 102 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 Y_RNA.493-201ENST00000384422 102 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 RNU6-101P-201ENST00000410323 104 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 RNU4-65P-201ENST00000410473 140 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 RNU2-50P-201ENST00000410494 143 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC130360.1-201ENST00000425489 1117 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 USMG5P1-201ENST00000425964 177 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AL360081.1-201ENST00000428299 555 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC211433.1-201ENST00000450426 686 ntTSL 4 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 RPS3AP41-201ENST00000462701 778 ntBASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 OARD1-209ENST00000471367 401 ntTSL 2 BASIC6.58□□□□□ -1.36
LIMD1Q9UGP4 AC124945.1-201ENST00000485133 188 ntBASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 141.1 ms