Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC009963.2-201ENST00000453431 138 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 ZNF114P1-201ENST00000453500 292 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 RPL7P22-201ENST00000466005 733 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 UQCRHP4-201ENST00000471686 272 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 RNF138P1-201ENST00000502765 546 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 ARL4AP1-201ENST00000503220 705 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 AC026402.1-201ENST00000513642 170 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC5.13□□□□□ -1.59
NUP88Q99567 MTCO1P35-201ENST00000515270 228 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 TBCA-206ENST00000518338 551 ntTSL 2 BASIC5.13□□□□□ -1.59
NUP88Q99567 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC5.13□□□□□ -1.59
NUP88Q99567 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.13□□□□□ -1.59
NUP88Q99567 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
NUP88Q99567 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.13□□□□□ -1.59
NUP88Q99567 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.13□□□□□ -1.59
NUP88Q99567 AC025884.1-201ENST00000556034 378 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.13□□□□□ -1.59
NUP88Q99567 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC5.13□□□□□ -1.59
NUP88Q99567 NDUFAF4P1-201ENST00000559425 519 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.13□□□□□ -1.59
NUP88Q99567 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC5.13□□□□□ -1.59
NUP88Q99567 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.13□□□□□ -1.59
NUP88Q99567 AC067959.1-201ENST00000604334 379 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 AC024560.3-201ENST00000608482 349 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 AC084782.3-201ENST00000612282 578 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 MIR3653-201ENST00000625572 110 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 AC068137.4-201ENST00000638485 296 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
NUP88Q99567 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.13□□□□□ -1.59
NUP88Q99567 AL122126.1-201ENST00000546905 1318 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.13□□□□□ -1.59
NUP88Q99567 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.13□□□□□ -1.59
NUP88Q99567 AP002907.1-201ENST00000606361 1430 ntBASIC5.13□□□□□ -1.59
NUP88Q99567 SAGE2P-201ENST00000420011 2126 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP88Q99567 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP88Q99567 AL158163.1-201ENST00000603915 1649 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NUP88Q99567 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
NUP88Q99567 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC5.12□□□□□ -1.59
NUP88Q99567 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
NUP88Q99567 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
NUP88Q99567 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
NUP88Q99567 RNA5SP28-201ENST00000363841 119 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 RN7SKP224-201ENST00000364140 325 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 RN7SKP227-201ENST00000364445 330 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 RNA5SP366-201ENST00000365454 123 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 RNU1-63P-201ENST00000383902 164 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 VDAC1P9-201ENST00000412766 841 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 RPL23AP39-201ENST00000415533 405 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP88Q99567 ZYG11AP1-201ENST00000430329 837 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 RPL36AP33-201ENST00000450395 310 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP88Q99567 RN7SL817P-201ENST00000480777 288 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP88Q99567 AC108475.1-201ENST00000507880 950 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 RNA5SP216-201ENST00000516111 123 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AC008802.1-201ENST00000519121 791 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AC106038.2-201ENST00000520706 568 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP88Q99567 AC084824.1-201ENST00000550917 1005 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC5.12□□□□□ -1.59
NUP88Q99567 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP88Q99567 ANKRD36BP2-206ENST00000575193 1245 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 LARP7P2-201ENST00000575306 125 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AC079587.1-201ENST00000603846 277 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AL354984.3-201ENST00000604803 325 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 uc_338.13-201ENST00000618243 179 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AL023881.1-201ENST00000621088 301 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AC000123.2-201ENST00000623124 461 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AC091965.5-201ENST00000624785 342 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NUP88Q99567 AL596275.2-204ENST00000641628 552 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 AL596275.2-206ENST00000641957 626 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
NUP88Q99567 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
NUP88Q99567 AC083843.3-201ENST00000623679 2186 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
NUP88Q99567 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.12□□□□□ -1.59
NUP88Q99567 ZNF833P-201ENST00000424938 1494 ntBASIC5.12□□□□□ -1.59
NUP88Q99567 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.12□□□□□ -1.59
NUP88Q99567 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
NUP88Q99567 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
NUP88Q99567 AC009951.1-201ENST00000623674 2614 ntBASIC5.11□□□□□ -1.59
NUP88Q99567 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
NUP88Q99567 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.11□□□□□ -1.59
NUP88Q99567 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
NUP88Q99567 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
NUP88Q99567 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
NUP88Q99567 OR10J6P-201ENST00000289731 930 ntBASIC5.11□□□□□ -1.59
NUP88Q99567 RNU6-500P-201ENST00000362349 107 ntBASIC5.11□□□□□ -1.59
NUP88Q99567 RNU4-44P-201ENST00000363050 141 ntBASIC5.11□□□□□ -1.59
NUP88Q99567 Y_RNA.126-201ENST00000363382 111 ntBASIC5.11□□□□□ -1.59
NUP88Q99567 RNU6-723P-201ENST00000383973 107 ntBASIC5.11□□□□□ -1.59
NUP88Q99567 MIR3065-201ENST00000390137 79 ntBASIC5.11□□□□□ -1.59
NUP88Q99567 SNORA26.8-201ENST00000391306 124 ntBASIC5.11□□□□□ -1.59
NUP88Q99567 AL024474.1-201ENST00000404655 591 ntBASIC5.11□□□□□ -1.59
NUP88Q99567 HDGFP1-201ENST00000405943 252 ntBASIC5.11□□□□□ -1.59
NUP88Q99567 RPL7P8-201ENST00000411964 730 ntBASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 153.5 ms