Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RNU6-964P-201ENST00000516524 69 ntBASIC0.95□□□□□ -2.26
SYNE1Q8NF91 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC0.95□□□□□ -2.26
SYNE1Q8NF91 ZKSCAN7P1-201ENST00000543668 673 ntBASIC0.95□□□□□ -2.26
SYNE1Q8NF91 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC0.95□□□□□ -2.26
SYNE1Q8NF91 AC009101.1-201ENST00000568135 242 ntBASIC0.95□□□□□ -2.26
SYNE1Q8NF91 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC0.95□□□□□ -2.26
SYNE1Q8NF91 AC243829.7-201ENST00000633081 225 ntBASIC0.95□□□□□ -2.26
SYNE1Q8NF91 AC244205.2-202ENST00000635781 342 ntBASIC0.95□□□□□ -2.26
SYNE1Q8NF91 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC0.95□□□□□ -2.26
SYNE1Q8NF91 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC0.95□□□□□ -2.26
SYNE1Q8NF91 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC0.95□□□□□ -2.26
SYNE1Q8NF91 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC0.95□□□□□ -2.26
SYNE1Q8NF91 OR10AB1P-202ENST00000641219 1686 ntBASIC0.95□□□□□ -2.26
SYNE1Q8NF91 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC0.95□□□□□ -2.26
SYNE1Q8NF91 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AL356968.1-201ENST00000416622 474 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC012498.1-201ENST00000424037 437 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 RPL21P40-201ENST00000428586 483 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC008264.1-201ENST00000447612 367 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 snoU13.23-201ENST00000458863 104 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 RPS29P26-201ENST00000477483 171 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 NDUFB4P9-201ENST00000511646 388 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 HMGB1P6-201ENST00000569046 646 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AL136164.4-201ENST00000625013 2135 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 HLFP1-201ENST00000402375 499 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AP000936.3-201ENST00000438127 255 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 WASF1P1-201ENST00000447560 1131 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 RPS27AP18-201ENST00000515536 459 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AL360182.1-201ENST00000397433 468 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC126124.2-201ENST00000413542 321 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 OR1AA1P-201ENST00000419597 916 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC245517.4-201ENST00000448601 281 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC068305.1-201ENST00000497406 726 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 EEF1A1P37-201ENST00000522748 715 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AGGF1P8-201ENST00000562979 1000 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 BNIP3P38-201ENST00000601117 544 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 MAPK10-266ENST00000641066 6555 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AL049781.1-201ENST00000623195 3585 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 RN7SKP56-201ENST00000410513 331 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AL591806.2-201ENST00000433122 173 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 CBX1P4-201ENST00000439415 457 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC078785.3-201ENST00000476607 425 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 RPL23AP44-201ENST00000482216 473 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 RN7SKP116-201ENST00000516902 319 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AC103710.3-201ENST00000608157 948 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 AL732372.2-225ENST00000642124 456 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
SYNE1Q8NF91 SNORA9.2-201ENST00000365361 133 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 MIR137-201ENST00000385223 102 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 RNU6-328P-201ENST00000390887 106 ntBASIC0.94□□□□□ -2.26
SYNE1Q8NF91 HSD52-202ENST00000436225 772 ntTSL 3 BASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms