Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC6.76□□□□□ -1.33
COL9A1P20849 NUTF2P3-201ENST00000448540 384 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 GAS5-218ENST00000448718 565 ntTSL 2 BASIC6.76□□□□□ -1.33
COL9A1P20849 AC104164.1-201ENST00000460282 590 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 AC006463.2-201ENST00000473326 348 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 RPS24P16-201ENST00000497294 392 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC6.76□□□□□ -1.33
COL9A1P20849 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC6.76□□□□□ -1.33
COL9A1P20849 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC6.76□□□□□ -1.33
COL9A1P20849 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL9A1P20849 AC093023.1-201ENST00000547375 507 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.76□□□□□ -1.33
COL9A1P20849 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC6.76□□□□□ -1.33
COL9A1P20849 AC022884.2-201ENST00000578535 580 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC6.76□□□□□ -1.33
COL9A1P20849 AC012119.1-201ENST00000603184 222 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 FP236240.3-201ENST00000623061 327 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 AC243829.7-201ENST00000633081 225 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL9A1P20849 AC124045.1-201ENST00000606008 1953 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL9A1P20849 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.76□□□□□ -1.33
COL9A1P20849 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL9A1P20849 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.76□□□□□ -1.33
COL9A1P20849 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL9A1P20849 HSPA8P4-201ENST00000511877 1920 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 EOGT-210ENST00000615922 1931 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 SAGE3P-201ENST00000619800 1635 ntBASIC6.76□□□□□ -1.33
COL9A1P20849 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
COL9A1P20849 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC6.76□□□□□ -1.33
COL9A1P20849 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL9A1P20849 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
COL9A1P20849 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.75□□□□□ -1.33
COL9A1P20849 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 RNU6-45P-201ENST00000384471 107 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 MIR550A3-201ENST00000390735 95 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC6.75□□□□□ -1.33
COL9A1P20849 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC6.75□□□□□ -1.33
COL9A1P20849 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC6.75□□□□□ -1.33
COL9A1P20849 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC6.75□□□□□ -1.33
COL9A1P20849 AC004453.1-201ENST00000487895 408 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 HMGB1P21-201ENST00000502313 581 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 SSX8-201ENST00000506270 579 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 AC007016.1-201ENST00000512110 244 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 Y_RNA.667-201ENST00000516212 107 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 SCARNA24.2-201ENST00000516968 130 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC6.75□□□□□ -1.33
COL9A1P20849 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC6.75□□□□□ -1.33
COL9A1P20849 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC6.75□□□□□ -1.33
COL9A1P20849 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC6.75□□□□□ -1.33
COL9A1P20849 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC6.75□□□□□ -1.33
COL9A1P20849 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.75□□□□□ -1.33
COL9A1P20849 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC6.75□□□□□ -1.33
COL9A1P20849 AC123768.4-201ENST00000616244 701 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 OR2T35-202ENST00000641268 2957 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
COL9A1P20849 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 PPARGC1A-217ENST00000613098 3210 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
COL9A1P20849 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL9A1P20849 PWAR1-201ENST00000624188 2414 ntBASIC6.75□□□□□ -1.33
COL9A1P20849 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.75□□□□□ -1.33
COL9A1P20849 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC6.75□□□□□ -1.33
COL9A1P20849 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC6.75□□□□□ -1.33
COL9A1P20849 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC6.74□□□□□ -1.33
COL9A1P20849 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC6.74□□□□□ -1.33
COL9A1P20849 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 OPALIN-203ENST00000393871 3545 ntTSL 2 BASIC6.74□□□□□ -1.33
COL9A1P20849 HNRNPA1P54-201ENST00000411857 9714 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL9A1P20849 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
COL9A1P20849 RNA5SP273-201ENST00000362484 113 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 RNU6-804P-201ENST00000384286 107 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 RNU6-394P-201ENST00000410735 107 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 BMS1P22-201ENST00000414726 313 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 EI24P4-201ENST00000423683 1078 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 AL590762.4-201ENST00000425885 253 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC6.74□□□□□ -1.33
COL9A1P20849 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC6.74□□□□□ -1.33
COL9A1P20849 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.74□□□□□ -1.33
COL9A1P20849 RN7SL705P-201ENST00000481678 294 ntBASIC6.74□□□□□ -1.33
COL9A1P20849 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.74□□□□□ -1.33
COL9A1P20849 RPL7P47-201ENST00000497299 556 ntBASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms