Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.99□□□□□ -1.77
MSH3P20585 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC3.99□□□□□ -1.77
MSH3P20585 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSH3P20585 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSH3P20585 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.98□□□□□ -1.77
MSH3P20585 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSH3P20585 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSH3P20585 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
MSH3P20585 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSH3P20585 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
MSH3P20585 RNU6-839P-201ENST00000363347 108 ntBASIC3.98□□□□□ -1.77
MSH3P20585 RNU1-13P-201ENST00000384499 162 ntBASIC3.98□□□□□ -1.77
MSH3P20585 RNU6-628P-201ENST00000410675 107 ntBASIC3.98□□□□□ -1.77
MSH3P20585 RNU6-272P-201ENST00000411028 104 ntBASIC3.98□□□□□ -1.77
MSH3P20585 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.98□□□□□ -1.77
MSH3P20585 AL031736.2-201ENST00000426573 787 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.98□□□□□ -1.77
MSH3P20585 AC004975.1-201ENST00000428733 208 ntBASIC3.98□□□□□ -1.77
MSH3P20585 USP9YP31-201ENST00000431405 881 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC011742.1-201ENST00000431448 434 ntBASIC3.98□□□□□ -1.77
MSH3P20585 MTND1P32-201ENST00000433043 938 ntBASIC3.98□□□□□ -1.77
MSH3P20585 SEPT7P5-201ENST00000434048 306 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC093155.1-201ENST00000440164 826 ntBASIC3.98□□□□□ -1.77
MSH3P20585 HSFY6P-201ENST00000445573 403 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AL162151.2-201ENST00000448875 158 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.98□□□□□ -1.77
MSH3P20585 HMGB3P22-202ENST00000451823 572 ntBASIC3.98□□□□□ -1.77
MSH3P20585 RPL5P32-201ENST00000454085 879 ntBASIC3.98□□□□□ -1.77
MSH3P20585 FTH1P24-201ENST00000503502 462 ntBASIC3.98□□□□□ -1.77
MSH3P20585 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.98□□□□□ -1.77
MSH3P20585 AC010486.2-201ENST00000505572 483 ntBASIC3.98□□□□□ -1.77
MSH3P20585 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.98□□□□□ -1.77
MSH3P20585 MTCYBP16-201ENST00000509187 1129 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC048346.1-201ENST00000510247 144 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC109471.1-201ENST00000511631 612 ntBASIC3.98□□□□□ -1.77
MSH3P20585 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.98□□□□□ -1.77
MSH3P20585 RNA5SP135-201ENST00000517019 125 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.98□□□□□ -1.77
MSH3P20585 HIGD1AP6-201ENST00000521833 279 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.98□□□□□ -1.77
MSH3P20585 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSH3P20585 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.98□□□□□ -1.77
MSH3P20585 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.98□□□□□ -1.77
MSH3P20585 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.98□□□□□ -1.77
MSH3P20585 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.98□□□□□ -1.77
MSH3P20585 RFPL1S-203ENST00000539579 330 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC091516.1-201ENST00000549191 703 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC107016.1-201ENST00000550463 337 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.98□□□□□ -1.77
MSH3P20585 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC3.98□□□□□ -1.77
MSH3P20585 AC008088.1-201ENST00000580993 280 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.98□□□□□ -1.77
MSH3P20585 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.98□□□□□ -1.77
MSH3P20585 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSH3P20585 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
MSH3P20585 AC009039.2-201ENST00000624524 529 ntBASIC3.98□□□□□ -1.77
MSH3P20585 AF001550.2-201ENST00000636643 217 ntBASIC3.98□□□□□ -1.77
MSH3P20585 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
MSH3P20585 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSH3P20585 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
MSH3P20585 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSH3P20585 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSH3P20585 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.97□□□□□ -1.77
MSH3P20585 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.97□□□□□ -1.77
MSH3P20585 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH3P20585 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
MSH3P20585 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH3P20585 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSH3P20585 RNU4-40P-201ENST00000364351 143 ntBASIC3.97□□□□□ -1.77
MSH3P20585 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.97□□□□□ -1.77
MSH3P20585 RNU6-157P-201ENST00000383957 107 ntBASIC3.97□□□□□ -1.77
MSH3P20585 SNORD116-8-201ENST00000384365 95 ntBASIC3.97□□□□□ -1.77
MSH3P20585 RNU6-1151P-201ENST00000384684 107 ntBASIC3.97□□□□□ -1.77
MSH3P20585 RSL24D1P4-201ENST00000400938 484 ntBASIC3.97□□□□□ -1.77
MSH3P20585 RPL7P53-201ENST00000421245 739 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH3P20585 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.97□□□□□ -1.77
MSH3P20585 VDAC1P6-201ENST00000430062 855 ntBASIC3.97□□□□□ -1.77
MSH3P20585 OR4C10P-201ENST00000434991 931 ntBASIC3.97□□□□□ -1.77
MSH3P20585 RPS26P40-201ENST00000435209 294 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC004865.1-201ENST00000442276 1003 ntBASIC3.97□□□□□ -1.77
MSH3P20585 RAB11AP1-201ENST00000442978 646 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.97□□□□□ -1.77
MSH3P20585 FABP3P2-201ENST00000453169 399 ntBASIC3.97□□□□□ -1.77
MSH3P20585 RFC5P1-201ENST00000454419 874 ntBASIC3.97□□□□□ -1.77
MSH3P20585 ATG12P2-201ENST00000456830 416 ntBASIC3.97□□□□□ -1.77
MSH3P20585 RPL5P24-201ENST00000463742 885 ntBASIC3.97□□□□□ -1.77
MSH3P20585 RPL21P71-201ENST00000465598 459 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC103987.1-201ENST00000473394 348 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC108734.3-201ENST00000481241 1165 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC068587.1-201ENST00000483613 781 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC093267.1-201ENST00000489176 961 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AL132838.2-201ENST00000492041 314 ntBASIC3.97□□□□□ -1.77
MSH3P20585 AC092045.1-201ENST00000495716 1231 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms