Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 NPM1P6-201ENST00000521088 871 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC060788.1-201ENST00000521318 469 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AP002963.1-201ENST00000530590 184 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 OR4A12P-201ENST00000530847 918 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 FKBP1BP1-201ENST00000553366 325 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC012213.3-201ENST00000577199 777 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC090312.1-201ENST00000580637 348 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 SNORD39.3-201ENST00000584451 71 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC020910.3-201ENST00000603701 874 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC092656.1-203ENST00000624134 423 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC092192.1-201ENST00000633154 1018 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 OR4G11P-202ENST00000642116 1414 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 MTND4P5-201ENST00000435821 1374 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 AC139713.2-214ENST00000642059 1811 ntBASIC4.51□□□□□ -1.69
VPS4AQ9UN37 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.51□□□□□ -1.69
VPS4AQ9UN37 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 U3.4-201ENST00000363352 213 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 RNU6-374P-201ENST00000364146 108 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 RNA5SP88-201ENST00000365560 109 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 RNU6-657P-201ENST00000383904 107 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 RNU6-921P-201ENST00000384361 107 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 ARL4AP5-201ENST00000404372 599 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 RN7SKP263-201ENST00000411194 309 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AL160275.2-201ENST00000412010 394 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC114755.2-201ENST00000413520 361 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC009237.10-201ENST00000414112 510 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 FABP7P1-201ENST00000424004 391 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC093414.1-201ENST00000434712 514 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 MTCO1P48-201ENST00000448024 1096 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 RPL5P30-201ENST00000465511 891 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AHI1-208ENST00000488690 712 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 RPS4XP18-201ENST00000495480 763 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 FTH1P24-201ENST00000503502 462 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 MTCYBP17-201ENST00000503579 789 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC004069.2-201ENST00000505438 1114 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 CASP1-212ENST00000531166 300 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC084757.1-201ENST00000559987 490 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 ANKRD36BP2-206ENST00000575193 1245 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC110743.1-201ENST00000584870 478 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC008759.1-201ENST00000589783 983 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC083899.3-201ENST00000603413 594 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 MIR6853-201ENST00000619642 74 ntBASIC4.5□□□□□ -1.69
VPS4AQ9UN37 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
VPS4AQ9UN37 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 154 ms