Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL18A1P39060 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
COL18A1P39060 ASNSP3-201ENST00000451989 1306 ntBASIC3.74□□□□□ -1.81
COL18A1P39060 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL18A1P39060 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
COL18A1P39060 RPL32P35-201ENST00000415214 394 ntBASIC3.74□□□□□ -1.81
COL18A1P39060 GTF2IP23-201ENST00000423746 351 ntBASIC3.74□□□□□ -1.81
COL18A1P39060 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.74□□□□□ -1.81
COL18A1P39060 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.74□□□□□ -1.81
COL18A1P39060 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.74□□□□□ -1.81
COL18A1P39060 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.74□□□□□ -1.81
COL18A1P39060 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC3.74□□□□□ -1.81
COL18A1P39060 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.74□□□□□ -1.81
COL18A1P39060 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.74□□□□□ -1.81
COL18A1P39060 AC007424.1-203ENST00000554613 687 ntBASIC3.74□□□□□ -1.81
COL18A1P39060 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.74□□□□□ -1.81
COL18A1P39060 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.74□□□□□ -1.81
COL18A1P39060 AC016252.1-201ENST00000609721 474 ntBASIC3.74□□□□□ -1.81
COL18A1P39060 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.73□□□□□ -1.81
COL18A1P39060 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC3.73□□□□□ -1.81
COL18A1P39060 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL18A1P39060 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC3.73□□□□□ -1.81
COL18A1P39060 SNORD56.3-201ENST00000363507 71 ntBASIC3.73□□□□□ -1.81
COL18A1P39060 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL18A1P39060 SNORA79B-201ENST00000410557 148 ntBASIC3.73□□□□□ -1.81
COL18A1P39060 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.73□□□□□ -1.81
COL18A1P39060 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.73□□□□□ -1.81
COL18A1P39060 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.73□□□□□ -1.81
COL18A1P39060 SERPINE4P-201ENST00000554978 281 ntBASIC3.73□□□□□ -1.81
COL18A1P39060 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.73□□□□□ -1.81
COL18A1P39060 AC015849.6-201ENST00000605454 474 ntBASIC3.73□□□□□ -1.81
COL18A1P39060 AC026790.2-201ENST00000606282 430 ntBASIC3.73□□□□□ -1.81
COL18A1P39060 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC3.73□□□□□ -1.81
COL18A1P39060 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
COL18A1P39060 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL18A1P39060 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
COL18A1P39060 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
COL18A1P39060 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL18A1P39060 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL18A1P39060 RNU1-75P-201ENST00000347264 129 ntBASIC3.72□□□□□ -1.81
COL18A1P39060 RNA5SP68-201ENST00000363885 119 ntBASIC3.72□□□□□ -1.81
COL18A1P39060 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL18A1P39060 RPS7P13-201ENST00000413955 498 ntBASIC3.72□□□□□ -1.81
COL18A1P39060 AP002884.2-201ENST00000471647 395 ntBASIC3.72□□□□□ -1.81
COL18A1P39060 AC021146.1-201ENST00000511202 716 ntBASIC3.72□□□□□ -1.81
COL18A1P39060 AP000916.1-201ENST00000533869 835 ntBASIC3.72□□□□□ -1.81
COL18A1P39060 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.72□□□□□ -1.81
COL18A1P39060 Z82195.1-201ENST00000604558 398 ntBASIC3.72□□□□□ -1.81
COL18A1P39060 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
COL18A1P39060 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL18A1P39060 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL18A1P39060 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL18A1P39060 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC3.71□□□□□ -1.81
COL18A1P39060 RNA5SP289-201ENST00000362332 137 ntBASIC3.71□□□□□ -1.81
COL18A1P39060 RHEBP3-201ENST00000411920 351 ntBASIC3.71□□□□□ -1.81
COL18A1P39060 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.71□□□□□ -1.81
COL18A1P39060 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.71□□□□□ -1.81
COL18A1P39060 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.71□□□□□ -1.81
COL18A1P39060 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.71□□□□□ -1.81
COL18A1P39060 RN7SKP5-201ENST00000517045 272 ntBASIC3.71□□□□□ -1.81
COL18A1P39060 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
COL18A1P39060 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.71□□□□□ -1.81
COL18A1P39060 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.71□□□□□ -1.81
COL18A1P39060 AL451049.1-201ENST00000608672 497 ntBASIC3.71□□□□□ -1.81
COL18A1P39060 AL591516.1-201ENST00000611326 274 ntBASIC3.71□□□□□ -1.81
COL18A1P39060 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
COL18A1P39060 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL18A1P39060 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
COL18A1P39060 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.71□□□□□ -1.82
COL18A1P39060 AC046144.1-201ENST00000478559 1853 ntBASIC3.71□□□□□ -1.82
COL18A1P39060 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL18A1P39060 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL18A1P39060 MIR184-201ENST00000384962 84 ntBASIC3.71□□□□□ -1.82
COL18A1P39060 LAP3P1-201ENST00000403648 294 ntBASIC3.71□□□□□ -1.82
COL18A1P39060 SNORA81-201ENST00000408493 178 ntBASIC3.71□□□□□ -1.82
COL18A1P39060 AC006960.1-201ENST00000419980 153 ntBASIC3.71□□□□□ -1.82
COL18A1P39060 ZYG11AP1-201ENST00000430329 837 ntBASIC3.71□□□□□ -1.82
COL18A1P39060 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.71□□□□□ -1.82
COL18A1P39060 AC022882.1-201ENST00000532142 501 ntBASIC3.71□□□□□ -1.82
COL18A1P39060 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.71□□□□□ -1.82
COL18A1P39060 AL358913.1-201ENST00000554342 121 ntBASIC3.71□□□□□ -1.82
COL18A1P39060 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC3.71□□□□□ -1.82
COL18A1P39060 AL365503.1-201ENST00000605247 905 ntBASIC3.71□□□□□ -1.82
COL18A1P39060 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.7□□□□□ -1.82
COL18A1P39060 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL18A1P39060 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL18A1P39060 SNORA46-201ENST00000384762 135 ntBASIC3.7□□□□□ -1.82
COL18A1P39060 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL18A1P39060 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.7□□□□□ -1.82
COL18A1P39060 RPS12P23-201ENST00000419579 400 ntBASIC3.7□□□□□ -1.82
COL18A1P39060 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.7□□□□□ -1.82
COL18A1P39060 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.7□□□□□ -1.82
COL18A1P39060 MTCO1P52-201ENST00000433928 531 ntBASIC3.7□□□□□ -1.82
COL18A1P39060 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC3.7□□□□□ -1.82
COL18A1P39060 AC003982.1-202ENST00000469928 248 ntBASIC3.7□□□□□ -1.82
COL18A1P39060 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.7□□□□□ -1.82
COL18A1P39060 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.7□□□□□ -1.82
COL18A1P39060 MIR6817-201ENST00000615588 66 ntBASIC3.7□□□□□ -1.82
COL18A1P39060 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.7□□□□□ -1.82
COL18A1P39060 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms