Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 MIR504-201ENST00000385065 83 ntBASIC3.37□□□□□ -1.87
COL4A5P29400 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
COL4A5P29400 TOMM20P4-201ENST00000427861 435 ntBASIC3.37□□□□□ -1.87
COL4A5P29400 HMGB3P6-201ENST00000444896 598 ntBASIC3.37□□□□□ -1.87
COL4A5P29400 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.37□□□□□ -1.87
COL4A5P29400 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.37□□□□□ -1.87
COL4A5P29400 SERPINE4P-201ENST00000554978 281 ntBASIC3.37□□□□□ -1.87
COL4A5P29400 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.37□□□□□ -1.87
COL4A5P29400 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC3.37□□□□□ -1.87
COL4A5P29400 AC016542.2-201ENST00000624201 619 ntBASIC3.37□□□□□ -1.87
COL4A5P29400 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A5P29400 ZNF658B-202ENST00000615961 3375 ntBASIC3.37□□□□□ -1.87
COL4A5P29400 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A5P29400 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL4A5P29400 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A5P29400 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
COL4A5P29400 FTH1P6-201ENST00000430768 320 ntBASIC3.36□□□□□ -1.87
COL4A5P29400 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A5P29400 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A5P29400 CBX1P4-201ENST00000439415 457 ntBASIC3.36□□□□□ -1.87
COL4A5P29400 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.36□□□□□ -1.87
COL4A5P29400 AC099063.2-201ENST00000446360 662 ntBASIC3.36□□□□□ -1.87
COL4A5P29400 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A5P29400 RN7SL330P-201ENST00000469709 307 ntBASIC3.36□□□□□ -1.87
COL4A5P29400 ST13P14-201ENST00000474095 734 ntBASIC3.36□□□□□ -1.87
COL4A5P29400 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A5P29400 AC107016.2-201ENST00000547968 190 ntBASIC3.36□□□□□ -1.87
COL4A5P29400 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A5P29400 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A5P29400 AC009159.1-201ENST00000618386 642 ntBASIC3.36□□□□□ -1.87
COL4A5P29400 RMST_9.1-201ENST00000619945 193 ntBASIC3.36□□□□□ -1.87
COL4A5P29400 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC3.36□□□□□ -1.87
COL4A5P29400 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
COL4A5P29400 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A5P29400 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
COL4A5P29400 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.36□□□□□ -1.87
COL4A5P29400 AP003122.3-201ENST00000526316 255 ntBASIC3.36□□□□□ -1.87
COL4A5P29400 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A5P29400 DNAJC19P3-201ENST00000594491 331 ntBASIC3.36□□□□□ -1.87
COL4A5P29400 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A5P29400 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A5P29400 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A5P29400 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A5P29400 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
COL4A5P29400 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A5P29400 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A5P29400 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A5P29400 MIR184-201ENST00000384962 84 ntBASIC3.35□□□□□ -1.87
COL4A5P29400 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A5P29400 XIST-201ENST00000416330 750 ntTSL 2 BASIC3.35□□□□□ -1.87
COL4A5P29400 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC3.35□□□□□ -1.87
COL4A5P29400 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.35□□□□□ -1.87
COL4A5P29400 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.35□□□□□ -1.87
COL4A5P29400 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.35□□□□□ -1.87
COL4A5P29400 FAM172BP-201ENST00000487497 1089 ntBASIC3.35□□□□□ -1.87
COL4A5P29400 SNORA31.21-201ENST00000517180 77 ntBASIC3.35□□□□□ -1.87
COL4A5P29400 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC3.35□□□□□ -1.87
COL4A5P29400 RMST_8.1-201ENST00000610287 165 ntBASIC3.35□□□□□ -1.87
COL4A5P29400 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.35□□□□□ -1.87
COL4A5P29400 AL591516.1-201ENST00000611326 274 ntBASIC3.35□□□□□ -1.87
COL4A5P29400 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A5P29400 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A5P29400 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A5P29400 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A5P29400 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A5P29400 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A5P29400 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC3.34□□□□□ -1.87
COL4A5P29400 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A5P29400 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A5P29400 MIR764-201ENST00000390811 85 ntBASIC3.34□□□□□ -1.87
COL4A5P29400 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.34□□□□□ -1.87
COL4A5P29400 AL513477.1-202ENST00000417061 214 ntBASIC3.34□□□□□ -1.87
COL4A5P29400 FAR1P1-201ENST00000427163 934 ntBASIC3.34□□□□□ -1.87
COL4A5P29400 snoU13.26-201ENST00000459452 105 ntBASIC3.34□□□□□ -1.87
COL4A5P29400 AC078817.1-201ENST00000492623 435 ntBASIC3.34□□□□□ -1.87
COL4A5P29400 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC3.34□□□□□ -1.87
COL4A5P29400 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
COL4A5P29400 AC117522.3-201ENST00000507974 584 ntBASIC3.34□□□□□ -1.87
COL4A5P29400 AC006445.2-201ENST00000510061 472 ntBASIC3.34□□□□□ -1.87
COL4A5P29400 FABP5P12-201ENST00000515543 389 ntBASIC3.34□□□□□ -1.87
COL4A5P29400 ATP5F1P7-201ENST00000567330 760 ntBASIC3.34□□□□□ -1.87
COL4A5P29400 SNORD53-201ENST00000579969 78 ntBASIC3.34□□□□□ -1.87
COL4A5P29400 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.34□□□□□ -1.87
COL4A5P29400 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A5P29400 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL4A5P29400 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A5P29400 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
COL4A5P29400 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
COL4A5P29400 RNU2-22P-201ENST00000411266 212 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 RPL30P2-201ENST00000414021 291 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A5P29400 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.33□□□□□ -1.88
COL4A5P29400 AC003982.1-202ENST00000469928 248 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 SRIP1-201ENST00000489235 288 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.33□□□□□ -1.88
COL4A5P29400 AL356490.1-201ENST00000623079 479 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A5P29400 AC107027.3-201ENST00000565095 3473 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A5P29400 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 168.4 ms