Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.78□□□□□ -1.96
VPS13AQ96RL7 RPL7P8-201ENST00000411964 730 ntBASIC2.78□□□□□ -1.96
VPS13AQ96RL7 VTA1P1-201ENST00000414044 866 ntBASIC2.78□□□□□ -1.96
VPS13AQ96RL7 MTCO1P52-201ENST00000433928 531 ntBASIC2.78□□□□□ -1.96
VPS13AQ96RL7 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 IGHV3-63-201ENST00000518422 341 ntBASIC2.78□□□□□ -1.96
VPS13AQ96RL7 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 AC123768.4-201ENST00000616244 701 ntBASIC2.78□□□□□ -1.96
VPS13AQ96RL7 AC079228.1-201ENST00000624774 1049 ntBASIC2.78□□□□□ -1.96
VPS13AQ96RL7 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
VPS13AQ96RL7 Y_RNA.595-201ENST00000410403 105 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 RPL23AP15-201ENST00000450202 459 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 DNAJC19P1-201ENST00000455312 319 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 MIR1273D-201ENST00000577266 86 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 NTAN1P1-201ENST00000603150 646 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC074276.2-201ENST00000619891 348 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC000403.1-201ENST00000613696 3585 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 HMGN2P8-201ENST00000391458 268 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 IL7R-208ENST00000511982 612 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 BNIP3P38-201ENST00000601117 544 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 RNA5SP213-201ENST00000391031 106 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC124916.1-201ENST00000444020 547 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 FTH1P11-201ENST00000517577 551 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC009948.4-201ENST00000604692 675 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC046143.2-201ENST00000609789 160 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC233309.1-201ENST00000619522 751 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC103798.2-201ENST00000624292 632 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AC006020.1-201ENST00000420179 1854 ntBASIC2.77□□□□□ -1.97
VPS13AQ96RL7 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 B3GNT2P1-201ENST00000434960 952 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 HMGB3P12-201ENST00000438745 556 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 RNA5SP282-201ENST00000516355 108 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 AC010680.4-201ENST00000605334 543 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 AC018555.1-201ENST00000567548 1980 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 AC017071.1-201ENST00000564407 2204 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 AC048351.1-201ENST00000420064 602 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 RPL12P26-201ENST00000452430 487 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 AC007938.3-201ENST00000604965 623 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 AC009039.2-201ENST00000624524 529 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 NSRP1P1-201ENST00000444067 1693 ntBASIC2.76□□□□□ -1.97
VPS13AQ96RL7 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.76□□□□□ -1.97
VPS13AQ96RL7 RANP4-201ENST00000413361 655 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 AC243972.3-201ENST00000539655 198 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 OR2B8P-201ENST00000432841 938 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 AC073587.1-201ENST00000447093 876 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 AC009063.1-201ENST00000563342 702 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 MAPK10-320ENST00000641462 6696 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 AC008725.1-201ENST00000605123 2263 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS13AQ96RL7 AL049555.1-201ENST00000562834 1933 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 RPS4XP5-202ENST00000449995 1334 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 RPL21P132-201ENST00000331267 462 ntBASIC2.75□□□□□ -1.97
VPS13AQ96RL7 Y_RNA.140-201ENST00000363474 103 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms