Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 Y_RNA.138-201ENST00000363462 102 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 RNA5SP514-201ENST00000363717 111 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 RNA5SP232-201ENST00000364144 119 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 RN7SKP171-201ENST00000364417 303 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 SNORA23-201ENST00000365128 182 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 RN7SKP187-201ENST00000365536 330 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 CRP-204ENST00000368112 787 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 SMIM11P1-201ENST00000369586 178 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 RN7SKP86-201ENST00000410454 332 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 ARL5AP1-201ENST00000418991 388 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 KCTD9P3-201ENST00000434597 1169 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 CYCSP43-201ENST00000438233 310 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AC012512.1-201ENST00000446594 718 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AL591623.2-201ENST00000449978 222 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 RN7SL254P-201ENST00000460609 284 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 RN7SL352P-201ENST00000466002 277 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 HMGN1P10-201ENST00000474557 553 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AP003072.1-201ENST00000531740 145 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AL137161.1-201ENST00000532231 390 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 OR1E3-201ENST00000575608 948 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 DUSP12P1-201ENST00000612874 516 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 MIR7109-201ENST00000613748 65 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AC004696.1-201ENST00000614345 607 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 AL512652.1-201ENST00000619006 500 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CCDC140Q96MF4 MTCO1P11-201ENST00000429111 1528 ntBASIC4.72□□□□□ -1.65
CCDC140Q96MF4 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
CCDC140Q96MF4 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
CCDC140Q96MF4 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
CCDC140Q96MF4 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC4.71□□□□□ -1.65
CCDC140Q96MF4 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
CCDC140Q96MF4 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC4.71□□□□□ -1.65
CCDC140Q96MF4 AL662795.2-201ENST00000624252 3706 ntBASIC4.71□□□□□ -1.65
CCDC140Q96MF4 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 DMD-228ENST00000541735 7080 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.162-201ENST00000363683 102 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 RNU105B-201ENST00000364478 208 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.301-201ENST00000364990 103 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.414-201ENST00000384011 101 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 RNU6-356P-201ENST00000384140 107 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.530-201ENST00000384587 101 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AL121835.1-201ENST00000404250 354 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AL359634.1-202ENST00000404721 284 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AL096829.1-201ENST00000413677 457 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 RPS23P10-201ENST00000416185 486 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AC020550.1-201ENST00000447385 163 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 snoU13.3-201ENST00000459441 104 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 RNU6-1208P-201ENST00000459588 107 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AC116533.1-201ENST00000459748 321 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 RPL21P8-201ENST00000465083 535 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AC128716.1-201ENST00000475129 166 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AC106872.2-201ENST00000494303 480 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 HMGN1P9-201ENST00000515212 298 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.682-201ENST00000516457 100 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AC008489.1-201ENST00000524271 483 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AP005597.4-201ENST00000526762 229 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 RANP3-201ENST00000530970 276 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AC093012.1-202ENST00000549403 582 ntBASIC4.71□□□□□ -1.66
CCDC140Q96MF4 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC140Q96MF4 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms